Gene Information

Name : ygfF (PAJ_2414)
Accession : YP_005935290.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Unknown
Product : short chain dehydrogenase YgfF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2913040 - 2913795 bp
Length : 756 bp
Strand : -
Note : similar to Pantoea sp. At-9b, short-chain dehydrogenase/reductase SDR (NCBI: ZP_05731453.1) COG: lipid transport and metabolism subcellular localization as predicted by Psort 2.0: cytoplasmic

DNA sequence :
ATGGAGGTTTGTATGCAGCTCGCACTCGTTACCGGCGGCAGTCGCGGCATTGGTCGCGCGACGTCACTCTTACTGGCATC
CCGAGGCTACCGGGTGGCGGTCAATTTCCGTTCACGTGCCAGTGAAGCCCATCAGGTTGTAGATGAGATTGTACGTAACG
GCGGTGAGGCCTTTAGCGTTCAGGCCGATATCAGCGATGAAACACAGGTGATGTCGCTGTTTCAACGGCTGGATCAGGAA
GATCTGCCGCTCACGCTGCTGGTGAATAACGCCGGCATTCTGTTCCAACAATGTCGCCTTGAGCAACTGGATGCCTCACG
TATTCAGCAGGTTTTTGCCACCAACGTGCTTGGCGCATTTCTTTGCTGTCGTGAAGCCGTCCGGCGCATGGGCACCCATC
ATGGCGGTCAGGGCGGCAGCATCGTCAATGTCTCCTCTGCAGCTGCCCGTACGGGGTCGCCAAACGAATATGTCGACTAT
GCGGCATCGAAAGGCGCAATGGACACGATGACCAAAGGCCTGTCGCTGGAAGTGGCCCAGCAGGGAATTCGGGTCAATGG
CGTACGTCCGGGGATGATCTACACCGAGATGCATGCGGACGGAGGCGAGCCGGGTAGAGTCGACCGGCTGGCCAGCGGCA
TACCAATGGGGCGCGGCGGCTATGCCGAAGAAATCGCAGAAGCCGTTGTCTGGTTAGCCAGCGATGCCGCTTCTTACATT
ACGGGCAGCATTATCGATGCCGCCGGCGGGCGCTAG

Protein sequence :
MEVCMQLALVTGGSRGIGRATSLLLASRGYRVAVNFRSRASEAHQVVDEIVRNGGEAFSVQADISDETQVMSLFQRLDQE
DLPLTLLVNNAGILFQQCRLEQLDASRIQQVFATNVLGAFLCCREAVRRMGTHHGGQGGSIVNVSSAAARTGSPNEYVDY
AASKGAMDTMTKGLSLEVAQQGIRVNGVRPGMIYTEMHADGGEPGRVDRLASGIPMGRGGYAEEIAEAVVWLASDAASYI
TGSIIDAAGGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf29 AAO17195.1 Orf29 Not tested tcd island Protein 3e-69 61
VSAL_I1482 YP_002262921.1 glucose 1-dehydrogenase Not tested Not named Protein 9e-65 60