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Name : papC (PAJ_2013) Accession : YP_005934889.1 Strain : Pantoea ananatis AJ13355 Genome accession: NC_017531 Putative virulence/resistance : Virulence Product : outer membrane usher protein PapC Function : - COG functional category : - COG ID : - EC number : - Position : 2440117 - 2442591 bp Length : 2475 bp Strand : - Note : similar to Serratia entomophila, SefC (NCBI: NP_938127.1) COG: cell motility and chemotaxis subcellular localization as predicted by Psort 2.0: outer membrane DNA sequence : ATGGGTAAACCACAACTATTACATCGATATTGTCTTTTTTTTAGCGTTTTAATAACGATGTCGGGTTATTGCGTCGATAC ACGCGCTGTTGAATTTAATACTGACATTCTTGATGCCGAAGATCGAAATAATATTGATTTATCCCGTTTCGCCCGTGCGG GTTACATCATGCCGGGTACCTATAGTCTCACACTTCGGTTGAATGAGCGGAATATCATTGAACAGGAGGTGGTGTTTAAA GAGAAGAAAGGTGCCGAAGAAGTGCAGGCCTGTCTGACGCCTCAGCAGGTTGAGTTACTCGGTCTTAAGCACGATGCGCT GGCAAAGATAAGCTTTGACCATGATGACGACTGCGCTGATTTTTCCGCGCTGGACGGTGTCAGGCTGCGCGGCGATCTTT CAACCTCGTCGCTCTATATTTCGGTACCCCAGGCCTGGCTCGAATATCAGGATGCCACCTGGCTGCCGCCTTCACGCTGG GAGAATGGCGTACCGGGGGTGATGCTGGATTATAACATCAATACCAGCTTCACCCGTCCGGTACACGGCAGTCAGTCACA GCGAGCCAGTGCCACCGGTACGCTCGGTGCAAACAGCGGCCCCTGGCGTTTGCGAGGCGACTGGCAGGCTAACTACAACA AGACAGGCGGCTCCAGCGGTGGCACGACCCAACGTATCGACTGGAGTCGCTTTTACCTTTATCGCGCGCTGCCGTCGCTT ATGGCGAAACTCACTCTGGGTGAGGATTATCTTCGATCGGATATTTTTGATACATGGCGCTTCACCGGCGCGTCATTGGT CAGCGATGAAAGCCAGCTGCCCCCCAGGCTGCGCGGCTATGCGCCGGAGGTGAGCGGCATTGCACGCACCAATGCCAAAG TCATCATCAGCCAGCAGGGACGGATCATTTACGAAACCATGGTGGCGGCAGGACCGTTCCGCGTGCAGGAACTCAGCAGT GCGGTGAGTGGGCAACTGGACGTAAAGGTGGAAGAGCAGGACGGTAGCGTACAACACTTTCAGGTCACCACAGCCACCGT GCCCTATCTGACCCGGCCGGGCCAGGTGCGCTACAAGCTGGCCACCGGGCGCCCCTCCGATTTCCACCACCATGTGCAAG GGCCGACATTTGGCACCGCCGAAATATCATGGGGCGTGGCTAACAGTTGGTCACTGTATGGCGGGAGTATTTTCTCTGCG GACTATCACAGTCTGGCCATTGGTGTGGCTCGTGATCTTTACCGGTTTGGTGCGCTCTCAGCGGATATCACCCAGTCTGC AACATCGTTACCGGACAGGGGACATTTACAGGGCCGTTCCTACCGTTTGAGTTATTCAAAGCGCTTTGACGACTTCAACA GCGATTTGACCTTTGCGGGCTACCGTTTTTCCGAACGCAATTACATGACCATGACGGAGTACCTTGACGCGCGCTATCGC AATGGCGTAACGGGCAGCAGTAAAGAACTTTATACCGTTACGGCGAGCAAAAGTTTTACGGATCTCAACCTTTCTGCCTA CCTGAGCTGGTCTCACCAGACGTACTGGGATCGCCCGCGTGCCGACCGTTACAGCCTTTCTGCCAGTCGTTATTTCGATC TGAACCGTTGGCGCAATCTGTCCGCCACCGTTTCCGCCGTGCGAACGCGCGATTACGGCCGTAAGGATGATGCGCTCTGG CTAACGATAAGTGTTCCTTTTGGTCAGGGGACGGCCAGCTACAACGGCAACTGGAGTCAACAGACTTACAGCCAAACCGC AGGATGGTATGAACGCCTGGAAAACGGTGACAGTTATCGCCTGTCGGCCGGAACGCGAAGCGGAAAAAGCGAGAGCATCA CGACCCAGGCGAGCGGGCTGTACAGCCACACAGGAACGGCTGCAGACATCACCGCCAATCTGGGCTGGCAGCAGAACGGC TATACCTCAGCGGGCTTGTCGATTAGCGGCGGCCTGACAGCGACCAGCGAAGGGGGCGCGCTCCATGGCAGCAGCGTCAG AGGAGGCACCCGAGTGTTGGTCAGCACCGATGGCGTGGCGAATGTGCCGGTGGGCCGTAATGGCATGACCAACCGATTTG GCCTGGCCGTAGAACCCTCCGTACCCGGCTACTATCGCGCCACGGTCAAGGTAGATGTGAATCGGTTGCCGGATGACATC GAAATCAGTAGCGCGCCCGTTGCGGAAGTTTCACTGACCGAAGGGGCGATTGGTTTCCGCCGTTTTGACGTGCTCAAGGG CGCGAAAGTCGTGGCGACTGTCGCGATGGCTGACGGCACTTTTCCTCCTTTTGGGGCCAGCGTGCGCAATGCAAAAGATC AGGAGTTAGGCATGGTGAGTGAAGCGGGCTTAGCCTGGATTTCAGGGGTTAAACCCGACGAGGTGCTGACGCTGTTCTGG GGCGACAAGGCACAGTGCCGGGCAACGCTTCCGTCACTCATCCCCGACAGTCAACTGCTGCTGCCCTGCGAGTAA Protein sequence : MGKPQLLHRYCLFFSVLITMSGYCVDTRAVEFNTDILDAEDRNNIDLSRFARAGYIMPGTYSLTLRLNERNIIEQEVVFK EKKGAEEVQACLTPQQVELLGLKHDALAKISFDHDDDCADFSALDGVRLRGDLSTSSLYISVPQAWLEYQDATWLPPSRW ENGVPGVMLDYNINTSFTRPVHGSQSQRASATGTLGANSGPWRLRGDWQANYNKTGGSSGGTTQRIDWSRFYLYRALPSL MAKLTLGEDYLRSDIFDTWRFTGASLVSDESQLPPRLRGYAPEVSGIARTNAKVIISQQGRIIYETMVAAGPFRVQELSS AVSGQLDVKVEEQDGSVQHFQVTTATVPYLTRPGQVRYKLATGRPSDFHHHVQGPTFGTAEISWGVANSWSLYGGSIFSA DYHSLAIGVARDLYRFGALSADITQSATSLPDRGHLQGRSYRLSYSKRFDDFNSDLTFAGYRFSERNYMTMTEYLDARYR NGVTGSSKELYTVTASKSFTDLNLSAYLSWSHQTYWDRPRADRYSLSASRYFDLNRWRNLSATVSAVRTRDYGRKDDALW LTISVPFGQGTASYNGNWSQQTYSQTAGWYERLENGDSYRLSAGTRSGKSESITTQASGLYSHTGTAADITANLGWQQNG YTSAGLSISGGLTATSEGGALHGSSVRGGTRVLVSTDGVANVPVGRNGMTNRFGLAVEPSVPGYYRATVKVDVNRLPDDI EISSAPVAEVSLTEGAIGFRRFDVLKGAKVVATVAMADGTFPPFGASVRNAKDQELGMVSEAGLAWISGVKPDEVLTLFW GDKAQCRATLPSLIPDSQLLLPCE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 53 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 51 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 51 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 51 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 51 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 50 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| papC | YP_005934889.1 | outer membrane usher protein PapC | VFG1548 | Protein | 0.0 | 51 |
| papC | YP_005934889.1 | outer membrane usher protein PapC | VFG0884 | Protein | 0.0 | 51 |
| papC | YP_005934889.1 | outer membrane usher protein PapC | VFG0895 | Protein | 0.0 | 51 |
