Gene Information

Name : yfcS (PAJ_2009)
Accession : YP_005934885.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Virulence
Product : fimbrial chaperone YfcS
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2436292 - 2437086 bp
Length : 795 bp
Strand : -
Note : similar to Providencia rettgeri DSM 1131, hypothetical fimbrial chaperone yfcs (NCBI: ZP_06125306.1) COG: cell motility and chemotaxis subcellular localization as predicted by Psort 2.0: periplasmic

DNA sequence : 
ATGTGGACAAAAGCGATATTGATAAAGCTCTGGGCCATTCTGGCGCTGGCAGGCAGTGTGAATGCCCATGGCGCGCTGAC
GGTTGATCGATCGCGCCTGATCCTTAATCAGGGGGAAAAGTCGATCAGCCTGAACGTAACCAACCGCAATGAAAAAGATC
CCTACCTGGCGCAGGGCTGGATGGAAGATGTAGACGGAAAAAAAATCAGCGGTCCGCTGATGGTATTGCCGCCGGTGCAG
CGTGTTGAAGCGGGCGGCAAGACGCTGGTGCGTATTCAGGTTCTCCCGGCCATCTCGTCGCTGCCGACAGACAGGGAAAG
CGTTTTCTACCTTAATCTGCGGGAAATACCGCCAAAATCGGCTAAAGCCAACGTCCTGACGCTGGCGATGCAGATCCGGC
TCAAAGTCTTCTATCGCCCTAAAGGACTGAACGTGGATCCGATGTCAGATACGGTTCCCGGCACGGAAACCCTGACGCTG
ATTAAGCAGGGAAACCAGTATGAAGTGCACAACCCAACGCCCTACCATTTTTCCTTCGTCGAAGTCAGACGAAGCCTGAC
CGGAAGCGGACTGGCACGTTTTGAACCCGTCATGGTGGCACCGAAAAGCCGCCAACTGCTCAGTCCGACCGTCAGTGAGT
TAGGCAGCACGCCGGTTCTGATGTTCGTCAGCGATTACGGCAGCCAACGGTTGTTGCCGTTTATTTGCAACGGCAACACC
TGCCAGGCAGAGAAATCGCGCATACCGAATGAGATTTCCTTTAGGCAACAGCAGGCGGAGCGCAATGAAAGCTAA

Protein sequence : 
MWTKAILIKLWAILALAGSVNAHGALTVDRSRLILNQGEKSISLNVTNRNEKDPYLAQGWMEDVDGKKISGPLMVLPPVQ
RVEAGGKTLVRIQVLPAISSLPTDRESVFYLNLREIPPKSAKANVLTLAMQIRLKVFYRPKGLNVDPMSDTVPGTETLTL
IKQGNQYEVHNPTPYHFSFVEVRRSLTGSGLARFEPVMVAPKSRQLLSPTVSELGSTPVLMFVSDYGSQRLLPFICNGNT
CQAEKSRIPNEISFRQQQAERNES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 5e-44 44
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 3e-39 43
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 7e-44 42
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 5e-44 42
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 5e-44 42
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 7e-44 42
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 7e-44 42
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 7e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfcS YP_005934885.1 fimbrial chaperone YfcS VFG0885 Protein 1e-39 43
yfcS YP_005934885.1 fimbrial chaperone YfcS VFG1547 Protein 4e-44 42
yfcS YP_005934885.1 fimbrial chaperone YfcS VFG0896 Protein 3e-44 42