Gene Information

Name : basR (PAJ_1550)
Accession : YP_005934426.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein BasR/PmrA BasR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1862791 - 1863477 bp
Length : 687 bp
Strand : +
Note : similar to Klebsiella pneumoniae subsp. pneumoniae MGH 78578, DNA-binding transcriptional regulator BasR (NCBI: YP_001334473.1) COG: signal transduction mechanism subcellular localization as predicted by Psort 2.0: cytoplasmic

DNA sequence : 
ATGAAAATATTGATTGTTGAAGACGATGCCCTCCTACTTCAGGGGCTGGTACTGGCGCTGGAAGGTGCAGGCTACGTGTG
CGATGGTGTTTCAACGGTCCGTTCTGCCGAAGCCCATCTTGCCAGCGGACTTTACAGCCTGGTGCTGCTGGATATCGGCC
TGCCGGACGAAGACGGCCTGCATTTACTGCAACGCCTGCGTCGTCAAAAGCAGATGCAGCCCGTTTTAATCCTGACCGCA
CGCGATACCATTGAAGAGCGCATAGCCGGACTCGATGCCGGCGCTGATGACTATTTGATTAAGCCTTTTGCGCTGGATGA
GTTGCTGGCACGGATTCGCGCGCTGATCAGGCGTCACGTCAACCAGGGCGATTCCCGCCTCGAAGTGGGTAATCTGTCAC
TGGATATGACCCACCGCCAGATTCATCTGGATGACGTGCTGCTCGACCTGACGCCCAAAGAGTTTTCCATTCTGTCCCGG
TTGATGTTGAAAGCAGGCCATCCGGTTCACCGTGAGTTGCTGTATCAGGACATCTACAACTTTGATAATGAGCCCTCCAC
CAATACGCTGGAAGTCCATATTCATAACCTGCGCGACAAGGTGGGCAAAGCCACGATCCGAACGGTTCGCGGTTTTGGCT
ATGCCTTATCTCAGCCGCGCGCAGAAAACGAGTCATCACCCGAATGA

Protein sequence : 
MKILIVEDDALLLQGLVLALEGAGYVCDGVSTVRSAEAHLASGLYSLVLLDIGLPDEDGLHLLQRLRRQKQMQPVLILTA
RDTIEERIAGLDAGADDYLIKPFALDELLARIRALIRRHVNQGDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSR
LMLKAGHPVHRELLYQDIYNFDNEPSTNTLEVHIHNLRDKVGKATIRTVRGFGYALSQPRAENESSPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-23 42
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-23 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_005934426.1 transcriptional regulatory protein BasR/PmrA BasR BAC0487 Protein 6e-51 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_005934426.1 transcriptional regulatory protein BasR/PmrA BasR VFG0473 Protein 1e-57 73
basR YP_005934426.1 transcriptional regulatory protein BasR/PmrA BasR VFG0596 Protein 5e-24 42