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Name : ldcC (PAJ_0157) Accession : YP_005933033.1 Strain : Pantoea ananatis AJ13355 Genome accession: NC_017531 Putative virulence/resistance : Virulence Product : lysine decarboxylase LdcC Function : - COG functional category : - COG ID : - EC number : - Position : 188791 - 190965 bp Length : 2175 bp Strand : + Note : similar to Pantoea sp. At-9b, lysine decarboxylase (NCBI: ZP_05731579.1) COG: amino acid transport and metabolism subcellular localization as predicted by Psort 2.0: cytoplasmic DNA sequence : ATGCCTCAACAATCAGGGAGATGTGCATTGAATATTCTGGCGATCATGGGCGCGCATGGCGTGTTTTACAAAGATGAACC CTTGCGCGAACTGGAAGTCGCGCTGAGTCAGCAAGGTTTTCAACTCATCCGGCCGAAAAACAATGACGATCTGCTAAAAC TCATTGAACACAATCCCCGTATCAGCGGCGTCATTTTTGACTGGGATGAACACAACAGCCCGGAGCTGTGTGGTGAAATC AATCAGCTTAATGAATACCTGCCGCTGTATGCCTTTATCAATACCCATTCCCAGATGGATATCAGTATTAATGAAATGCG TATGCCGCTGCATTTCTTTGAATATGCTCTGAATGCCGCCGACGATATTGCTCTTCACATCCGACAGTACACAGATGACT ACCTCGACAACATCACGCCGCCGTTGACCAAAGCGTTGTTTACCTATGTGAAAGAGGGGAAATACACCTTCTGTACCCCT GGCCATATGGCCGGTACGGCCTTCCAGAAAAGCCCGGTCGGCTGCTTGTTCTATGACTTTTTTGGTGCCAATACGCTGAA GTCGGATATCTCGATTTCGGTAACGGAACTGGGATCGCTGCTGGACCACACAGGGCCGCATCTGGAAGCCGAGGAGTATA TCGCCCGCACTTTTGGTGCGGAACAGAGCTACATGGTGACCAACGGCACCTCGACCTCGAATAAAATCGTCGGAATGTAT GCTGCCCCGGCAGGCAGCACGATTCTGGTGGACCGCAACTGCCATAAGTCGCTCACGCATCTGTTGATGATGAGCGATTT GATCCCCATCTGGCTCAAGCCAACACGCAACGCATTGGGTATTTTGGGCGGTATTCCGCAAAAAGAGTTCACCCGTGCCA GCATCGAGCAAAAAGTGGCGGTCACGCCGCGCGCCAGTTGGCCGGTACATGCGGTGATTACCAATTCGACCTACGACGGT TTGCTCTACAACACTCAGTACATCAAGCAAACCCTTGAGGTGCCGTCGATCCACTTTGATTCTGCCTGGGTTCCCTATAC CAACTTTCATCCCATCTATGAGGGGAAAAGCGGCATGAGCGGTGAGCGGGTGCCGGGTAAAGTCTTCTATGAAACGCAGT CCACCCATAAACTGCTGGCGGCTTTTTCCCAGGCTTCGCTGATTCATATTAAAGGCGACTATGACGAGCAGACGTTTAAT GAAGCCTACATGATGCACACCACCACCTCACCGAACTATGCCATCGTCTCATCCATTGAGACAGCGGCGGCGATGCTGCG CGGAAATCCGGGCAAAAGACTCATTAACCGGTCAGTGGAACGCGCCCTGCATTTCCGTCGTGAGATACAGCGGTTGCGAG AAGAGTGCGACAGCTGGTTTTTTGATATCTGGCAGCCTGAACACGTTGATGAAGCCCAGTGCTGGCCAATACAGCCGGGG GAAGAGGACTGGCACGGATTCACCCAGGCCGATCGCGACCACATGTATCTTGATCCGATCAAGGTAACGATCCTGACACC CGGCATGAGCGAGCTGGGCGTGATGGCGGAAGAGGGCATTCCGGCGGCGCTGGTGGCGAAGTTCCTGGATGAGCGCGGCA TCGTGGTTGAAAAAACCGGCCCTTACAATCTGTTATTCCTGTTTAGTATCGGCATTGATAAAACCAAAGCGATGAGCGTG CTACGAGGGTTAACGGAGTTTAAGCGCGCCTACGATCTCAATCTCCGGGTCAAAAATATGTTGCCGGATCTCTATGCGGA GGATCCCGATTTTTATCGCAACATGCGTATTCAGACGCTGGCGCAGGGGATCCACCGTCTTATCCAGCAACATGATTTAC CGCGGCTCATGTTGAAGGCGTTTGACGTGTTGCCCGAGATGAAAATGACGCCGCATCAGGCTTTTCAGCAACAGGTGAAG GGCAATATTGAAACCGTGAACATCAATGAGCTGGTGGGCCGCATCTCTGCCAACATGATCCTGCCTTATCCTCCGGGCGT TCCTCTGGTGATGCCAGGTGAAATGATCACAGAACAAAGCCGCGCCGTACTCGACTTCCTGTTAATGCTGTGTAGCATTG GACGCCACTATCCTGGCTTTGAGACGGATATTCACGGCGCGATCCTCACCGAAGAGGGGGAATATCGGGTACGTGTGCTG AAACAGGCCGGGTAA Protein sequence : MPQQSGRCALNILAIMGAHGVFYKDEPLRELEVALSQQGFQLIRPKNNDDLLKLIEHNPRISGVIFDWDEHNSPELCGEI NQLNEYLPLYAFINTHSQMDISINEMRMPLHFFEYALNAADDIALHIRQYTDDYLDNITPPLTKALFTYVKEGKYTFCTP GHMAGTAFQKSPVGCLFYDFFGANTLKSDISISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMY AAPAGSTILVDRNCHKSLTHLLMMSDLIPIWLKPTRNALGILGGIPQKEFTRASIEQKVAVTPRASWPVHAVITNSTYDG LLYNTQYIKQTLEVPSIHFDSAWVPYTNFHPIYEGKSGMSGERVPGKVFYETQSTHKLLAAFSQASLIHIKGDYDEQTFN EAYMMHTTTSPNYAIVSSIETAAAMLRGNPGKRLINRSVERALHFRREIQRLREECDSWFFDIWQPEHVDEAQCWPIQPG EEDWHGFTQADRDHMYLDPIKVTILTPGMSELGVMAEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMSV LRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQTLAQGIHRLIQQHDLPRLMLKAFDVLPEMKMTPHQAFQQQVK GNIETVNINELVGRISANMILPYPPGVPLVMPGEMITEQSRAVLDFLLMLCSIGRHYPGFETDIHGAILTEEGEYRVRVL KQAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 72 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_005933033.1 | lysine decarboxylase LdcC | VFG1670 | Protein | 0.0 | 65 |
