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Name : topB (PAJ_1424) Accession : YP_005934300.1 Strain : Pantoea ananatis AJ13355 Genome accession: NC_017531 Putative virulence/resistance : Unknown Product : DNA topoisomerase III TopB Function : - COG functional category : - COG ID : - EC number : - Position : 1719631 - 1721547 bp Length : 1917 bp Strand : - Note : similar to Pantoea sp. At- 9b, DNA topoisomerase III (NCBI: ZP_05729421.1) COG: DNA replication, recombination and repair subcellular localization as predicted by Psort 2.0: cytoplasmic DNA sequence : ATGCGTTTGTTTATTGCAGAGAAACCCAGCCTTGGACGGGCCATTGCCGATGTACTGCCTAAACCGCACCGGCGTGGTGA GGGCTTTATCGCCTGCGGCAATGACCAGATAGTCACCTGGTGCGTGGGGCATTTACTGGAGCAGGCGCAGCCTGATGTGT ACGACAGCCGCTATGCGCGCTGGTCGCTGGTCGATCTGCCGATTATTCCTGAAAAATGGCGTTTGCAGCCGCGTCCTTCG GTGGCAAAACAACTCAAAGTGGTGGAAGGCTTACTGGCCCAGGCCGATGAAGTGGTGCACGCCGGCGACCCGGACAGGGA AGGCCAGCTGCTTGTGGATGAAGTGCTGGATTACCTTCAGCTTCCCGCTGAGAAACGCAGTAAAGTGCAGCGCTGTCTGA TTAACGACCTCAACCCACAGGCTGTGGAGCGGGCTATCAACCGGCTGCGTGAGAATCGCGAATTTATTCCCCTCTGCGTG TCCGCGCTGGCGCGAGCACGTGCCGACTGGCTTTACGGTATTAATATGACCCGCGCCTGGACGCTGCTGGGCCGGAATGC GGGCTATGATGGCGTGTTGTCCGTTGGACGCGTACAAACGCCGGTGTTGGGGCTGGTGGTGCGACGGGATGAAGAGATCG CGAATTTCGTCCCGAAGGATTACTTTGAAGTGAAAGCGCACATCGTCACGCCGGATGAGAGCCGGTTTACCGCGAACTGG ATCCCCAGTGAAGCCTGTGAACCCTGGCAGGATGAAGAAGGTCGCCTGCTGAAACGCTCACTGGCGGAACATGTGGTGGC GCGCATCAGCGGTCAGCCCGCTATCGTTACCGCCTACAGTGACAAGCGAGAAAACGACATTGCGCCGTTGCCGTTTTCAC TCTCCAGCCTGCAAATCGAGGCGGCAAAGCGCTTTGGTTTGAGTGCACAGGCGGTGCTGGACATCTGCCAGCGGTTATAT GAAACCCACAAGCTGATCACCTATCCACGTTCTGATAGCCGCTACTTACCCGATGAGCATTTTGCCGGCCGTCATGCGGT GCTCAATGCGATCCAGTCCCATCAACCCGATCTTACTCCACCAGCAGACTTTGATGCAGATCGAAAAAATCGCTGTTGGG ATGACAAAAAAGTGGATGCGCACCACGCCATTATTCCTACCGCGCGCGCCAGCGCAGTGAAACTTAATGAAAACGAACAG CAGATTTATGGACTGGTTGCGCGTCAGTATTTGATGCAGTTTTGTCCGGATGCCGTGTTCCGCAAATGCACCATCGATCT GGATATCGCGGGCGGTAAATTCGTGGCTAAAGCGCGCTTTCTGGCGGAGGCGGGCTGGCGTGCGCTGTTGGGTGGCAAAG AGCGCGATGAAGAAAACGATGGCATGCCGCTGCCTGTTGTAGCGAAAGACGATGAGCTGCTGTGCGAGCGGGGTGAGGTG CTGGCGAAACAGACACAACCGCCACGCCACTTTACCGACGCGACCTTGCTTTCGGCCATGACCGGCATTGCGCGCTTTGT GCAGGATAAAGAATTAAAGAAAGTGCTGCGTGCGACCGATGGTTTAGGAACGGAAGCCACGCGCGCAGGCATTATTGAAT TACTGTTCCGTCGTTCGTTTTTGCATAAGAAAGGGCGCTATATTCATTCTACTGATGCAGGCAAAGCGCTGATCCACTCG CTACCGGATCTCGCCGCCAGGCCGGACATGACGGCGCAATGGGAATCAACCCTGACGCGTATCAGTGAAAAGGCCTGTCG CTATGATGAATTTATGCAACCCCTGGTGCAGACGCTGAGCGGGCTTATTCAGCAGGCGCGACAGCAGCCCTCGGGACAGG CGTTTCGTGGTTTACCGTCCACCGGCCAAAAACGTCCACCGCGTAAAGCAGGGCGTAAAACGAAGGAAACTGAATAA Protein sequence : MRLFIAEKPSLGRAIADVLPKPHRRGEGFIACGNDQIVTWCVGHLLEQAQPDVYDSRYARWSLVDLPIIPEKWRLQPRPS VAKQLKVVEGLLAQADEVVHAGDPDREGQLLVDEVLDYLQLPAEKRSKVQRCLINDLNPQAVERAINRLRENREFIPLCV SALARARADWLYGINMTRAWTLLGRNAGYDGVLSVGRVQTPVLGLVVRRDEEIANFVPKDYFEVKAHIVTPDESRFTANW IPSEACEPWQDEEGRLLKRSLAEHVVARISGQPAIVTAYSDKRENDIAPLPFSLSSLQIEAAKRFGLSAQAVLDICQRLY ETHKLITYPRSDSRYLPDEHFAGRHAVLNAIQSHQPDLTPPADFDADRKNRCWDDKKVDAHHAIIPTARASAVKLNENEQ QIYGLVARQYLMQFCPDAVFRKCTIDLDIAGGKFVAKARFLAEAGWRALLGGKERDEENDGMPLPVVAKDDELLCERGEV LAKQTQPPRHFTDATLLSAMTGIARFVQDKELKKVLRATDGLGTEATRAGIIELLFRRSFLHKKGRYIHSTDAGKALIHS LPDLAARPDMTAQWESTLTRISEKACRYDEFMQPLVQTLSGLIQQARQQPSGQAFRGLPSTGQKRPPRKAGRKTKETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-109 | 42 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 4e-106 | 41 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-106 | 41 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-106 | 41 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 3e-105 | 41 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 6e-107 | 41 |
