Gene Information

Name : colR (PPUBIRD1_0952)
Accession : YP_005928841.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : ColR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1082275 - 1082958 bp
Length : 684 bp
Strand : +
Note : winged helix family two component transcriptional regulator

DNA sequence : 
ATGCGCATTCTTTTGGTTGAAGACAACCGCGATATCCTGGCCAACCTGGCCGATTACCTGGGCATGAAAGGCTACACCGT
CGACTGTGCCCAGGATGGCCTGTCCGGGCTGCATCTGGCTGCCACCGAACATTACGACCTGATCGTACTCGACATCATGC
TGCCAGGCATCGATGGCTACACGCTGTGCAAGCGCCTGCGCGAAGATGCCCGCCGTGACACGCCGGTGATCATGCTCACT
GCCCGCGACCAGCTGGACGACCGCCTGCAAGGTTTCCGCTCGGGTGCTGACGATTACCTGCTCAAGCCATTTGCCCTGTC
GGAGCTGGCTGCGCGCATCGAAGCGGTGCTGCGCCGTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGA
GCTACGACCTCGACACCCTCGAGGTGACCCGCCAGGGGCGCCTGCTGAAGCTCAACCCGGTCGGCCTCAAGCTGCTGGCG
GTACTGATGCAGAAAAGCCCGCACGTACTGCGCCGCGAGGTGCTGGAAGAAGCCTTGTGGGGCGACGACTGCCCCGATAG
CGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAAAAACCGTTGCTGCATACCGTCC
ATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLT
ARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRAQGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLA
VLMQKSPHVLRREVLEEALWGDDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR YP_005928841.1 ColR BAC0197 Protein 2e-35 43
colR YP_005928841.1 ColR BAC0125 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR YP_005928841.1 ColR VFG0596 Protein 1e-33 42
colR YP_005928841.1 ColR VFG1390 Protein 3e-31 41