Gene Information

Name : PPUBIRD1_0787 (PPUBIRD1_0787)
Accession : YP_005928678.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 890831 - 891799 bp
Length : 969 bp
Strand : -
Note : -

DNA sequence : 
ATGCACGACCCTTCCGCCCACAGCAAGCCGCGTATCGCCATCAGCGCCTGCCTGACCGGGCACAGCGTGCGCTACAACGG
CGGCCACAAGGCCTCCGACCTGTGCCGTAAACAGCTGGAACAGCACTTCGACTGGCTACCCGTGTGTCCGGAAGTGGCAA
TCGGCCTGGGTGTCCCGCGCGACCCGATTCGCCTGGTCGGCAACCCCGAGCAACCCGAAGTGGTCGGCACCCGCGACCCT
GGCAAGGACCTTACAGACCCGCTGCGCACCTATGGCGAGCAGATGGCCAACGAGCTTGACGACATCTGCGGCTACATCTT
CATGCAGAAGTCACCTTCATGCGGCCTGGAACGGGTAAAGGTTTATCAGGACAACGGCCACCCGGCCGTGCATGGCGGCC
GTGGCGTCTATGCCCAGGCTTTCTGCGCATTGCGCCCGGACCTGCCAGTAGAAGAAGAAGGCCGCCTGCATGACCCCGTG
CTGCGCGAGAACTTCATAAGCCGCGTTTACGCCTACGCCGACTGGCAGCGCCTGCTGGCCGAGGGCCTGAACCGTGGCGC
GCTGGTGCGCTTTCATTCGCGCTACAAGTATTTGCTGATGGCCAACAACCCCCAGGCCTATCGCACGCTCGGCCGCCTGC
TTGGCAGCATGAGCAAGGCTGATGAACCACAGACCATCGGCCCGCGCTATTTCAGCCAGCTGATGCAGGCCCTGCGCCGC
TGCGCCAGCCGCGGCACCCACAGTAACGTGCTGCAGCACCTGAGCGGCTACTTCAAGGATGCCCTGACACAGCAGGACAA
GGCCGAGTTGCAGGCAGTCATCGGCCAATACCAACAAGGCGTGGTACCTCTGGTAGTGCCACTGACCCTGCTCAAACATC
ATTTGCGCAAGCACCCAGACCCCTACCTGCAGCAACAAGCCTACCTGCAGCCTCACCCCGAGAGCCTGGGCTTGCGCAAT
GCGGTCTGA

Protein sequence : 
MHDPSAHSKPRIAISACLTGHSVRYNGGHKASDLCRKQLEQHFDWLPVCPEVAIGLGVPRDPIRLVGNPEQPEVVGTRDP
GKDLTDPLRTYGEQMANELDDICGYIFMQKSPSCGLERVKVYQDNGHPAVHGGRGVYAQAFCALRPDLPVEEEGRLHDPV
LRENFISRVYAYADWQRLLAEGLNRGALVRFHSRYKYLLMANNPQAYRTLGRLLGSMSKADEPQTIGPRYFSQLMQALRR
CASRGTHSNVLQHLSGYFKDALTQQDKAELQAVIGQYQQGVVPLVVPLTLLKHHLRKHPDPYLQQQAYLQPHPESLGLRN
AV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 2e-60 43
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 2e-60 43
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 1e-60 43
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 8e-61 43
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 1e-60 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_0787 YP_005928678.1 hypothetical protein VFG0490 Protein 6e-61 43