Gene Information

Name : PPUBIRD1_0594 (PPUBIRD1_0594)
Accession : YP_005928490.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : Aldehyde dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : 1.2.1.3
Position : 667358 - 668878 bp
Length : 1521 bp
Strand : -
Note : -

DNA sequence : 
ATGCGTTATGCACATCCCGGAACCGAAGGCGCGAAGGTTTCCTTCAAGAGCCGCTACGGCAACTACATCGGTGGTGAGTT
CGTTACTCCGGTAAAGGGGCAGTACTTCGAAAATACCTCCCCGGTGAATGGCAAGCTGATCGCTGAATTCCCCCGCTCTA
CTGCCGAAGACATCGAGAAGGCCCTGGATGCCGCCCATGCTGCGGCCGACGCCTGGGGCCGCACTTCAGTGCAGGATCGC
TCCAACGTTCTGCTGAAGATCGCCGACCGCATCGAGCAGAACCTCGAACTGCTGGCCATTACCGAAACCTGGGACAACGG
CAAGCCGATCCGCGAGACCCTCAACGCCGACATTCCGCTGGCCGTCGACCACTTCCGCTATTTCGCTGGCTGCATCCGCG
CCCAGGAAGGCGGCGCTGCCGAAATCAATGAAGGCACCGTGGCCTACCACATCCACGAGCCACTGGGCGTGGTCGGGCAG
ATCATCCCCTGGAACTTCCCGATCCTGATGGCTGCCTGGAAGCTTGCCCCGGCACTGGCCGCTGGTAACTGCGTGGTGCT
CAAGCCAGCCGAACAGACGCCGCTTGGCATCACCGTGCTGCTCGAAGTCATTGGCGACCTGCTGCCACCTGGCGTGCTCA
ACGTAGTGCAAGGCTATGGCCGCGAAGCCGGTGAAGCCCTGGCCACCAGCAAACGCATCGCCAAGATCGCCTTCACCGGC
TCTACCCCGGTGGGCTCGCACATCATGAAATGCGCCGCCGAGAACATCATCCCGTCCACCGTCGAACTGGGTGGCAAGTC
GCCGAACGTGTACTTCGAAGACATCATGCAGGCCGAGCCAAGCTTCATCGAGAAGGCAGCAGAAGGCATGGTGCTGGCAT
TCTTCAACCAGGGCGAAGTGTGCACCTGCCCGTCGCGTGCCCTGGTGCAAGAGTCGATCTATCCGCAGTTCATGGAAGTG
GTGATGAAGAAGGTGCTGCAGATCAAGCGCGGCGACCCGCTGGACACCGACACCATGGTCGGCGCCCAGGCCTCGCAGCA
GCAGTTCGAAAAGATCCTCTCGTACCTGCAGATTGCCCAGGAAGAAGGCGCCGAGCTGCTCACCGGCGGCAAGGTCGAGA
AGCTGGAAGGTGCGCTGGCTACCGGTTACTACATCCAGCCGACCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCAG
GAAGAAATCTTCGGCCCGGTGGTCAGCGTCACCACCTTCAAGGACGAAGCCGAAGCACTGGCGATTGCCAACGACACCGA
GTTCGGCCTGGGCGCCGGCGTGTGGACCCGCGACATCAACCGTGCCTACCGCATGGGCCGCGGCATTAAGGCTGGCCGTG
TGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCCGCGTTCGGCGGGTACAAGAAGTCGGGGGTTGGGCGTGAAACA
CACAAGATGATGCTGGATCACTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTA
G

Protein sequence : 
MRYAHPGTEGAKVSFKSRYGNYIGGEFVTPVKGQYFENTSPVNGKLIAEFPRSTAEDIEKALDAAHAAADAWGRTSVQDR
SNVLLKIADRIEQNLELLAITETWDNGKPIRETLNADIPLAVDHFRYFAGCIRAQEGGAAEINEGTVAYHIHEPLGVVGQ
IIPWNFPILMAAWKLAPALAAGNCVVLKPAEQTPLGITVLLEVIGDLLPPGVLNVVQGYGREAGEALATSKRIAKIAFTG
STPVGSHIMKCAAENIIPSTVELGGKSPNVYFEDIMQAEPSFIEKAAEGMVLAFFNQGEVCTCPSRALVQESIYPQFMEV
VMKKVLQIKRGDPLDTDTMVGAQASQQQFEKILSYLQIAQEEGAELLTGGKVEKLEGALATGYYIQPTLLKGNNKMRVFQ
EEIFGPVVSVTTFKDEAEALAIANDTEFGLGAGVWTRDINRAYRMGRGIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRET
HKMMLDHYQQTKNLLVSYDINPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 5e-152 66
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 2e-159 65
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 2e-159 65
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 2e-159 65
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 8e-159 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_0594 YP_005928490.1 Aldehyde dehydrogenase VFG0082 Protein 2e-152 66