Gene Information

Name : radC (PPUBIRD1_5078)
Accession : YP_005932830.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5684627 - 5685154 bp
Length : 528 bp
Strand : -
Note : -

DNA sequence : 
GTGAAGTTCGGCAGCTTGCGCCGGTTGCTGGAGGCCGACCGCGAGGCCTTCGTCGGCGAGCTTGGGTTGGGCCCGGTAAG
GTACAGCCAGCTGCAGGCACTGCTTGAGATTGGCCGCAGGCACCTTGCAACGTCGATTGAGCGGGAGTCTGCCATGGACA
GCCCGGCAGCGGTGCGACGCTACTTGAAAGCCATGCTCAGGCATGAGGCCAGCGAGGTGTTCGGGTGTCTGTTTCTCGAT
ACCAAGCACCGGCCACTGGCATTTGAGATCCTGTTCAGGGGCACGATAGATCGGGCGAGTGTCTATCCGCGAGAGGTGGT
GCGGCGGGCGTTGGTGCACAACGCTGCGGCATTGATCCTGTGTCACAACCATCCTTCAGGGATCAGTGAACCGAGTCAGG
ACGATGTGCATTTGACCCTGTCGTTGAAGCGGGGGCTGGCGTTGATCGATGTGCGGGTGCTGGATCACATCATCATTGGT
GATGGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGA

Protein sequence : 
MKFGSLRRLLEADREAFVGELGLGPVRYSQLQALLEIGRRHLATSIERESAMDSPAAVRRYLKAMLRHEASEVFGCLFLD
TKHRPLAFEILFRGTIDRASVYPREVVRRALVHNAAALILCHNHPSGISEPSQDDVHLTLSLKRGLALIDVRVLDHIIIG
DGEPLSMVEHGWIVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 6e-25 52
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 6e-24 49
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-25 46
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-25 46
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-25 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
radC YP_005932830.1 RadC VFG1119 Protein 1e-25 46