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Name : PPUBIRD1_4985 (PPUBIRD1_4985) Accession : YP_005932738.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Virulence Product : Type II secretion system protein E Function : - COG functional category : - COG ID : - EC number : - Position : 5576958 - 5578631 bp Length : 1674 bp Strand : + Note : - DNA sequence : ATGCACACCCCCGACAACCTGGCACTCGACCTCAAGCGCGTGCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAG CGATACCCTGCAAGTACTCGAACACGCCGCCGCCCACCCCGCTAGCCACCCGCTGGAACACATCGCCGCCTGCAGCCTGG AAAGCCGCCAGCACCCCGGCCAGCCCCTGGACCTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTAC CTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCGGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCAT CCTCATCGTCGCGGCTGATGCCTGCAGCGTCACCGTCGCCAGCGCCCAGCCTTTCCAGGATGACTGGCAGGCCGACCTGG CCCGCAGCCTCGGCCGGTCGATCCGTCGCGTACTGGCCAGCCCGCAGCAGATCCGTCAGTCAGCGCAGTCGTTCCACCGC CTGGCCCAGTCGGTAAAAGGCGCGCAATACCAGCAGTCGGCCAGCCTGGGGGAAATTGAGCAATTGCTTGAGCTGGGCAA ACGCCAGGCCGAGGCCAGCGCAGACGACGCGCATATCGTGCATATCGTCGACTGGCTGTTGCAGTACGCCATCGAGCAAC GCGCCAGTGATATCCACCTGGAACCACGCCGCGAACAGGGCCAGCTGCGCTACCGTATCGATGGCCTGCTGCACACCGTC TATGCCTTCCCCGCCGGGGTCACCCTGGCCCTCGTCAGCCGCCTGAAACACCTGGGCCGCATGGACGTTGCCGAGAAGCG CCGGCCGCAGGACGGCCGGCTGCAAAGCCGCCTACCCGGGGGTGGCGAAGTGGAGCTGCGGCTTTCGACCCTGCCCACCC CGTTTGGCGAGAAACTGGTGCTGCGCCTGTTCGACCCGCAACAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGC CAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAA AACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACCCCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGC GCCTGGAGCCAGCCTTCAACCAGCTGCAGGTACAGCCCACGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTG CGCCAAGATCCCGATATCATCATGATCGGCGAAATCCGCGACCGCGAAACCGCTCTGGTGGCGGTGCAGGCAGCGCTGAC CGGGCACCTGGTGCTATCGACCCTGCATACCAACGACGCCTGCGCAGCAATCACCCGTTTGCAAGAGCTGGGTGTGGCCG ACTACCTGATCAAGGCGACGCTTATCGGGGTGATGGCCCAGCGCCTGGTGCGAACCGTCTGCACCGACTGCCAGGCAGGT TCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGA TACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGCCAGGCGCTGGCCGATGGCCTGGTTGACC TGCGCCATTGCGGCGAGGCCAAAGTAGCCGCTGGGCAGACCCGTGCCGAGGAAGTGCTGCGCGTCTGCAACTGA Protein sequence : MHTPDNLALDLKRVLQALLADQHLHASDTLQVLEHAAAHPASHPLEHIAACSLESRQHPGQPLDLEHLCQWLADKVGQPY LRIDPMQLDLPQVTGLISPAFAQRHGILIVAADACSVTVASAQPFQDDWQADLARSLGRSIRRVLASPQQIRQSAQSFHR LAQSVKGAQYQQSASLGEIEQLLELGKRQAEASADDAHIVHIVDWLLQYAIEQRASDIHLEPRREQGQLRYRIDGLLHTV YAFPAGVTLALVSRLKHLGRMDVAEKRRPQDGRLQSRLPGGGEVELRLSTLPTPFGEKLVLRLFDPQQLQEGFDRLGLHG QQLAQWQRLLRQRQGIILVTGPTGSGKTSTLYTSLKLLATPQVNLCTIEDPIERLEPAFNQLQVQPTLDLGFANAVRAML RQDPDIIMIGEIRDRETALVAVQAALTGHLVLSTLHTNDACAAITRLQELGVADYLIKATLIGVMAQRLVRTVCTDCQAG SSATCRACRGTGFQGRTGLFELLEPSDTLRALIGPDADLTCLRRQALADGLVDLRHCGEAKVAAGQTRAEEVLRVCN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-59 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-59 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PPUBIRD1_4985 | YP_005932738.1 | Type II secretion system protein E | VFG2426 | Protein | 3e-49 | 45 |
| PPUBIRD1_4985 | YP_005932738.1 | Type II secretion system protein E | VFG2048 | Protein | 5e-59 | 44 |
| PPUBIRD1_4985 | YP_005932738.1 | Type II secretion system protein E | VFG0182 | Protein | 1e-57 | 44 |
