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Name : PPUBIRD1_4959 (PPUBIRD1_4959) Accession : YP_005932714.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Virulence Product : Sigma-54 dependent transcriptional regulator Function : - COG functional category : - COG ID : - EC number : - Position : 5547955 - 5548785 bp Length : 831 bp Strand : - Note : - DNA sequence : ATGACGTTTCAAAACCCGTTCGGCCAGCCGCTGCTGACCTTCCCCGAGCTGGACAAGAGCCCGCTTAGCATTCGTGCCAA GGCGCTGGTGTTCATCGACCCGCGCTCGCAGCAGCTGCGCGAGGACCTTGAGCGCCTGGCGCCACAACCTTTGCCGGTGC TGATCCGTGGCGAAACCGGCACCGGCAAGGAGCTGCTGGCCCGGCAGATCCACCGTACCAGCGACCGTGGAGGGTTGTTC GTGTCCGTCAACTGCGCGGCCATCAGCCCCACCTACGCCGATGCCGAGCTGTTTGGCTATAGCGCCGGCAGCCATGGCGG TACGGCCAGCAGCCGCGCCGGCTGGTTCGGTTCGGCCAGCGGCGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCAC TGGCGATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCCCCAGCCGGTG GATGTGCGTCTGGTAGCCGCCACCAGCATCGACCTGGCCCGTGTGGTGCGTGCAGGGCGCTTCAACGAGCGCCTGTACCA GTATTTGCGCGAGGGGGCGCTGGAGCTGCCGCCGCTGCGCGAGCGGCCGGGCGATATCCTGCCGCTGGCCGAGTACTTCG CGGGCATCTACAGCGTGCGCCTGCAGCGGCCTGTGCCCTTGGTGAGCGAGGCGGCGCAGCGGGTTCTGGAGGGGCATTTC TGGCCCGGCAATACCCGCGAACTGGAGAACGTCATCCACTTTGCCTTGCTGGTCAATGACGGCGAAGAGATCCTGCCAGA AGACCTCGACCTGCCTGACCCCGCGCGTTAG Protein sequence : MTFQNPFGQPLLTFPELDKSPLSIRAKALVFIDPRSQQLREDLERLAPQPLPVLIRGETGTGKELLARQIHRTSDRGGLF VSVNCAAISPTYADAELFGYSAGSHGGTASSRAGWFGSASGGTLYLDEIADLPLAIQGKLLAALENREVTRVGAQQPQPV DVRLVAATSIDLARVVRAGRFNERLYQYLREGALELPPLRERPGDILPLAEYFAGIYSVRLQRPVPLVSEAAQRVLEGHF WPGNTRELENVIHFALLVNDGEEILPEDLDLPDPAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 7e-39 | 44 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 7e-39 | 44 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-36 | 43 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 2e-32 | 43 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 2e-32 | 43 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 3e-36 | 42 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-35 | 42 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 4e-36 | 42 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 2e-36 | 41 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 1e-36 | 41 |
