Gene Information

Name : PPUBIRD1_4931 (PPUBIRD1_4931)
Accession : YP_005932686.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Resistance
Product : MerR family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5519626 - 5520120 bp
Length : 495 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCC
AGAGCCGGCGCGCAGCGAGGGCAACTACCGGCTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCC
GCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGCCGACGCGTGCGGCAGCGTC
AATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAACTGGTGGA
GCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTGC
CGGATACCGAGCATTCGCATGTGGGGAGAAGTCACGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCCCCCACAGGGA
CCGCGCACGACTTAG

Protein sequence : 
MKIGELAKATDCAVETIRYYERENLLPEPARSEGNYRLYTQAHVERLTFIRNCRTLDMTLDEIRSLLRLRDSPADACGSV
NALIDEHIEHVQARIDGLVALQEQLVELRRRCNAQGSECAILQQLETNGAVSVPDTEHSHVGRSHGIEPKASRVNPPPQG
PRTT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 2e-36 56
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 3e-32 52
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 2e-32 52
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 3e-32 52
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 3e-32 52
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 2e-32 52
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 2e-32 52
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 2e-32 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_4931 YP_005932686.1 MerR family transcriptional regulator BAC0058 Protein 5e-64 96
PPUBIRD1_4931 YP_005932686.1 MerR family transcriptional regulator BAC0301 Protein 1e-34 58
PPUBIRD1_4931 YP_005932686.1 MerR family transcriptional regulator BAC0682 Protein 1e-19 42