Gene Information

Name : PPUBIRD1_3967 (PPUBIRD1_3967)
Accession : YP_005931755.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Resistance
Product : D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : 1.1.1.28
Position : 4446746 - 4447735 bp
Length : 990 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCGCCCTGTTGTTCAGCAGCCAGCACTACGACCAGGAAAGCTTCACCAAGGCTGCCAGCGGCACCCCCTTGGAGCT
GCATTTCCAGCCCGCCCGCCTAACCCTCGACACCGCCGCCCTGGCAGATGGCTTTGAGGTGGTCTGCGCCTTCATCAATG
ACGAACTCGACGCGCCGGTGCTGCAGCGCCTGGCTGCAGCTGGCACGCGGTTGATCGCCCTGCGCTCGGCCGGCTACAAC
CACGTCGACCTGACCGCCGCCCAGCGCTTGGGGCTGGCCGTGGTGCGGGTGCCGGCCTACTCGCCACACGCCGTTGCCGA
GCACGCCGTGGCGCTCATCCTGGCACTCAACCGGCGCCTGCATCGGGCCTATAACCGCACCCGCGAAGGTGACTTCACCC
TGCACGGGCTGACCGGCTTCGACCTGCACGGCAAAACCGTCGGGGTGGTCGGTACCGGCCAGATCGGGGCCGCCTTCGCT
CGCATCATGGCCGGTTTCGGCTGCCAGCTGCTGGCGTACGACCCCTACCCCAACCCAGAGCTGCTGGCCCTTGGCGCCCG
CTACATGCCCCTGCCCGAGCTGTTGCGCGAAGCCCGCATCATCAGCCTGCACTGCCCACTGACCGAGCACACTCGCCACC
TGATCAACGCGCAAAGCCTGGCCCAGTTGCAGCCCGGCGCCATGCTGATCAACACCGGTCGCGGTGCGCTGGTCGACACA
CCGGCGCTGATCGACGCACTGAAAAGCGGCCAGCTTGGCTACCTGGGCCTGGACGTCTACGAGGAAGAAGCCCAACTGTT
CTTCGAGGACCGCTCTGACCTGCCCTTGCAAGACGATGTGCTGGCTCGGCTGCTGACCTTCCCCAACGTGATCATCACCG
CTCACCAGGCTTTCCTCACCCGCGAGGCGCTGGATGCCATTGCCGCAACCACACTGGACAACATCAACCGCTGGGCGGCA
GGCAATCCACAGAACCTGGTGATGGGTTAA

Protein sequence : 
MRALLFSSQHYDQESFTKAASGTPLELHFQPARLTLDTAALADGFEVVCAFINDELDAPVLQRLAAAGTRLIALRSAGYN
HVDLTAAQRLGLAVVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTREGDFTLHGLTGFDLHGKTVGVVGTGQIGAAFA
RIMAGFGCQLLAYDPYPNPELLALGARYMPLPELLREARIISLHCPLTEHTRHLINAQSLAQLQPGAMLINTGRGALVDT
PALIDALKSGQLGYLGLDVYEEEAQLFFEDRSDLPLQDDVLARLLTFPNVIITAHQAFLTREALDAIAATTLDNINRWAA
GNPQNLVMG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF2295 NP_815952.1 D-specific alpha-keto acid dehydrogenase Not tested Not named Protein 7e-43 42
vanHB YP_008394258.1 VanH protein, D-specific alpha-keto acid dehydrogenase Not tested Not named Protein 7e-43 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_3967 YP_005931755.1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein AF310956.2.orf4.gene Protein 1e-43 43
PPUBIRD1_3967 YP_005931755.1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein NC_005054.2598279.p0 Protein 3e-41 42
PPUBIRD1_3967 YP_005931755.1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein AF130997.1.orf3.gene Protein 1e-41 42
PPUBIRD1_3967 YP_005931755.1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein NC_014475.1.orf2.gen Protein 3e-41 42
PPUBIRD1_3967 YP_005931755.1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein U35369.1.gene5.p01 Protein 4e-43 42
PPUBIRD1_3967 YP_005931755.1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein AF155139.2.orf4.gene Protein 7e-41 41