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Name : PPUBIRD1_3828 (PPUBIRD1_3828) Accession : YP_005931620.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Virulence Product : Polysaccharide biosynthesis protein CapD Function : - COG functional category : - COG ID : - EC number : - Position : 4288330 - 4290324 bp Length : 1995 bp Strand : - Note : - DNA sequence : ATGCGCAGTTGGCTTCTACAGCTTACGCGGCGCCAGAAACGGTTGCTGCAATTGTCTACTGATGTGCTGCTGATATGGGT GGCGCTCTGGCTCGCGTTTGTGGTCCGTCTAGGCATTGAAGAGATGGCTAACCCCATAATCGACCATGCGTGGCTGTTCC TCACTGCTCCTTTGGTGTCCATTCCGTTGTTCATTCGCTTCGGTTTGTACCGTGCGGTGATGAGATATTTCGGTAACGAC GCCTTGATCGCCATCATCAAGGCCGTGACACTCTCGGCGCTCATTCTCGGCTTCATCATCTACTGGGCTAGCAACCACCA GAATGTTGTGCCGCGGTCCATCACCTTCAATTACTGGTGGTTGAGCCTGATCATGATCGGCGGTCTTCGCCTGGCCATGC GGCAGTATTTCTTGGGTGACTGGTTTGCCGCGGCTGTGCAGCACGTTCCTTTTGCCAGTAATGGCCGTGGCGATGGCCTG CCGCGAGTGGCCATCTATGGCGCCGGTGGTGCTGGCAATCAGCTTGCTGCCGCCCTGCGCTCTGACAAGGCCCTGCGCCC GGTTGCCTTCATCGACGATGACCCCAGCATCACCGACCGGGTGATTGCCGGCTTGCAGGTTTACCGCCCCGACCAGTTAC AGGACATGATCGATGCCACGGGAGCGCAGGAAATCCTGCTAGCCATACCGTCCTCTACCCGCACTCGCCGTCGCGAAATC CTCAACTTCCTTGAAGGCTACCCGCTGCACGTGCGCAGTATTCCCAGCTTCCTGGACCTGGCCAGCGGTAAAGTAAAGGT GGACGACATCCAGGAAGTAGATATTGCCGACCTATTGGGTCGCGATGCCGTCCCGGCACAGGCTGACCTGCTGGAGCGCT GCATCGTCGATCAGATCGTACTGGTAACCGGTGCCGGCGGCTCCATCGGCTCGGAACTGTGCCGGCAGATATTGGGCCAG GGGCCAAAAACCCTGCTGTTGTTCGACCATAGTGAATTCAACCTCTACAGCATCCTCTCCGAGCTGGAGCAGCGCGTTGC CCGTGAATCCCTTACGGTCAGCCTTGTACCCATCCTGGGCTCGGTGCGCAACCAGTCCCAGCTTCTGGACATCATGCGCA CCTGGCACGTCGACACTGTCTATCACGCAGCTGCCTATAAGCACGTGCCGATGGTGGAGCACAACATCACCGAAGGCCTG ATGAATAATGTCATCGGCACACTGCACACTGCCCAGGCCGCGTTGCAGGCCGGAGTTGCCAACTTCGTGCTGATTTCCAC CGACAAGGCCGTGCGCCCGACCAATGTGATGGGCAGCACCAAACGCCTGGCCGAGATGACCCTGCAGGCGCTGAGCCGCG AAGTGGCGCCGGTGCTGTTTGGCGACAGCAGCAACGTTTCGCAGGTGAACAAGACCCGCTTCACCATGGTGCGCTTCGGT AACGTGCTGGGCTCATCGGGGTCGGTGATTCCACTGTTCCACAAGCAGATCAAGGCGGGCGGCCCGCTTACCGTCACCCA CCCCAAGATCACCCGCTACTTCATGACCATTCCCGAGGCCGCGCAGCTGGTAATTCAGGCCGGCTCCATGGGCAAGGGTG GCGATGTGTTCGTGCTGGACATGGGCGAGCCGGTGAAAATTGTGGAACTGGCCGAGAAGATGATTCACCTGTCGGGCTTC AGTGTGCGCTCCGAGCGTAACCCGATGGGTGATATTGCCATTGAGTTCACCGGGTTGCGTCCGGGGGAAAAGCTGTATGA AGAGTTGCTGATTGGCGATAACGTCATTGCGACCCGTCACCCGATGATCATGAGTGCCAACGAAGACTTCCTGCCCTGGG ATACGCTCAAGGAGTTCCTGCGGCAGCTGATGGCGGCAGCGGCGGTTGATGACTTTGTGCGGGTACGGCAGTTGCTGCGC GAAACCGTGAGCGGCTATTCGCCGGAAGGCGAGATTGTCGACTGGATTTACCAGCAGCGGCGCCTGGAGCCCTGA Protein sequence : MRSWLLQLTRRQKRLLQLSTDVLLIWVALWLAFVVRLGIEEMANPIIDHAWLFLTAPLVSIPLFIRFGLYRAVMRYFGND ALIAIIKAVTLSALILGFIIYWASNHQNVVPRSITFNYWWLSLIMIGGLRLAMRQYFLGDWFAAAVQHVPFASNGRGDGL PRVAIYGAGGAGNQLAAALRSDKALRPVAFIDDDPSITDRVIAGLQVYRPDQLQDMIDATGAQEILLAIPSSTRTRRREI LNFLEGYPLHVRSIPSFLDLASGKVKVDDIQEVDIADLLGRDAVPAQADLLERCIVDQIVLVTGAGGSIGSELCRQILGQ GPKTLLLFDHSEFNLYSILSELEQRVARESLTVSLVPILGSVRNQSQLLDIMRTWHVDTVYHAAAYKHVPMVEHNITEGL MNNVIGTLHTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAEMTLQALSREVAPVLFGDSSNVSQVNKTRFTMVRFG NVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGKGGDVFVLDMGEPVKIVELAEKMIHLSGF SVRSERNPMGDIAIEFTGLRPGEKLYEELLIGDNVIATRHPMIMSANEDFLPWDTLKEFLRQLMAAAAVDDFVRVRQLLR ETVSGYSPEGEIVDWIYQQRRLEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-78 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PPUBIRD1_3828 | YP_005931620.1 | Polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 2e-114 | 47 |
| PPUBIRD1_3828 | YP_005931620.1 | Polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-74 | 42 |
