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Name : PPUBIRD1_3815 (PPUBIRD1_3815) Accession : YP_005931607.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein Function : - COG functional category : - COG ID : - EC number : - Position : 4265965 - 4267749 bp Length : 1785 bp Strand : + Note : - DNA sequence : GTGGGCCTGGGCGCCGACGAGCCGCCCCTGTCGCTGATCGTCGATGACGTGGGCGTGTACTACGACGCTTCCCAGCCGTC CCGCCTCGAACAGTTGATCGCCACGCCCCTCAACGCCGAGCAAACCCAACGTGCCCTGGCGCTACGTAGCCTGTGGCAGC AGCAACGGGTGTCGAAGTACAACGACGCACGCATCGAACTGCCAGCGCTGCCGGCCGACTGCGTGCTGGTGGCCGACCAG ACCTGTGGCGATGCCTCGTTGCAAGGTGCAGGGGCCAGCGACTTCCGGGCCATGCTGGAGGCGGCATTGGCCCGCTACCC GCATAGCACCATCGTGCTCAAGGTGCACCCCGACGTGGTGGCCGGGCGCAAGGCCGGGCACTTCGACCTGGCAGCGCTGG CCGGCAACCCGCGGGTGCAGGTACTGGCCCACAATGTTCACCCGGCCGATTTGCTGCCACGCATGCGTGCAGTGTTCGTG ATGACGTCGCAATTGGGCTTCGATGCCCTGCTTTGGGACGTACCGGTGCACACCTGGGGCATGCCGTTCTATGCCGGCTG GGGGCTGACCGACGACCGCTTGCCGGCACCTTCACGCCGCAAGCCTGTGCCGTTGGCGCAACTGATTCATGCCAGCCTGG TGGCCTACCCGCGCTATGTCTGCCCAGAACGTGGTCAGCCGTGTACGCCAGAGGTGCTGATCAACTGGCTGGGCCTGCAA CGGCGGCACCGCAGCGTGCTGCCAGACACCGTACAGATGCTGGGTTTCAGCCGCTGGAAAGAACCGCTGGCAAACCTGTT TTTCAATGGCGCGGCCATTCGCTTCGTCAATCCCGAGCAACCGCTGGCGCAAGACTTGCCCGTGGTGTCCTGGGGCTGCA AGCACGACACCCACCTTAGCGCCCACCCACTGCCCGTCAACCGCGTGGAAGACGGCTTCCTGCGCTCGGTCGGCCTGGGC GCCGGCAAGGCGCGACCGTTGTCGTGGGTGGTCGATGACCTGGGTATTTACTACGACGCCACCCGGCCTTCGCGCCTGGA GCGCATCCTGGCTGAAGAGCCCTTCGACCCGCAGTTGTTGGCCCGCGCGTATGCTTTGCGCCTGGCCATCTGCGCGGCGG GGCTGACCAAGTACAACTTGCCCGGCGCCAGCTGGCAGCGCCCCGCGCATGCGCAACGGGTGATCCTGGTGCCTGGCCAG GTGGAGGGCGATGCCTCCATCCGCTTTGGCGGCAACCGTATCCGCAGCAACCTGCAACTGCTGCGCGCCGTGCGTGAGCA AAACCCCGATGCGTGGGTGTTGTACAAACCCCACCCAGAGGTATTGGCCGGCACGCGCGCCCGCGGTGACGACGAAGCGC AAACCGTGCACTGGTGCGATGAAGTGATCGGCGATACGCCACTGCAACAATTGCTGGAAGTGGTCGACGAATTGCATGTA CTGACCTCGCAGTCGGGCTTCGAGGCCCTGCTGCGCGGTGTGCCGGTGACGACCTATGGCCAGCCGTTCTACGCCGGTTG GGGGCTGACCCGCGACATGGACCTTCAAGCACCGGTGCAGGCACGGCGCAGCCGACAACTGACGCTGGACCAGCTGGTAG CGGGCACGCTGCTGCTCTACCCCACTTACGTAAGCCTGGTGACCAACCGCTTCACCACCGCCGAACGAACCTTATACGAA CTACAAAATTGGCACGCCTTACCGCAGCCTGGAGCTCCCTCCCGATGGCAGGACTTGAAACGACGCTTGAGCAGTTTGTT GGGCATGAAGCGCCCGACCAACTGA Protein sequence : MGLGADEPPLSLIVDDVGVYYDASQPSRLEQLIATPLNAEQTQRALALRSLWQQQRVSKYNDARIELPALPADCVLVADQ TCGDASLQGAGASDFRAMLEAALARYPHSTIVLKVHPDVVAGRKAGHFDLAALAGNPRVQVLAHNVHPADLLPRMRAVFV MTSQLGFDALLWDVPVHTWGMPFYAGWGLTDDRLPAPSRRKPVPLAQLIHASLVAYPRYVCPERGQPCTPEVLINWLGLQ RRHRSVLPDTVQMLGFSRWKEPLANLFFNGAAIRFVNPEQPLAQDLPVVSWGCKHDTHLSAHPLPVNRVEDGFLRSVGLG AGKARPLSWVVDDLGIYYDATRPSRLERILAEEPFDPQLLARAYALRLAICAAGLTKYNLPGASWQRPAHAQRVILVPGQ VEGDASIRFGGNRIRSNLQLLRAVREQNPDAWVLYKPHPEVLAGTRARGDDEAQTVHWCDEVIGDTPLQQLLEVVDELHV LTSQSGFEALLRGVPVTTYGQPFYAGWGLTRDMDLQAPVQARRSRQLTLDQLVAGTLLLYPTYVSLVTNRFTTAERTLYE LQNWHALPQPGAPSRWQDLKRRLSSLLGMKRPTN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 3e-77 | 44 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 2e-77 | 44 |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 7e-92 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PPUBIRD1_3815 | YP_005931607.1 | capsular polysaccharide biosynthesis protein | VFG0259 | Protein | 3e-92 | 42 |
