Gene Information

Name : lolD (PPUBIRD1_3499)
Accession : YP_005931297.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Resistance
Product : protein LolD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3909367 - 3910065 bp
Length : 699 bp
Strand : -
Note : lipoprotein releasing system, ATP-binding protein

DNA sequence : 
ATGAGTGAGTCGCGCATGAGTGATAAAGCCGTTCTGAGTTGCCGCAACCTGGGCAAGTCCTACGACGAGGGCCCGGAGTC
GGTGCAGGTGCTGTCCGGGCTCAACCTGGAACTGCGGGCCGGTGAGCGGGTGGCCATCGTTGGCAGTTCCGGCTCGGGCA
AGAGTACCTTGCTCAACCTGCTGGGCGGCCTCGACCGGCCGACCCAGGGCAGCGTGTGGCTGGCTGGCGAAGAGCTGTCG
GCACTGGGCGAGCGTGCCCGTGGCCTGCTACGCAACCGCGAGTTGGGCTTCGTCTACCAGTTCCACCACCTGCTGCCGGA
ATTCACCGCTATCGAGAACGTGTGCATGCCGCTGCTGATCGGCCGGACGCCCATCCCCGAGGCCCGGGAGCGTGCCGAGG
CGCTGCTCAAGCGGGTAGGCCTGGGCCACCGCTTGAACCACAAGCCGGCCGAGCTTTCCGGCGGCGAGCGCCAGCGTGTG
GCGATTGCCCGGGCGCTGGTCAACCGCCCCGGCCTGGTGATGCTCGACGAGCCGACCGGTAACCTCGACCACCATACCGC
CCAAGGCATCCAGGAGCTGATGCAGGAGCTGTCCAGCGCTTCGCGCACGGCATTCCTGGTGGTCACCCACGACCTCAACC
TGGCGCGGCAGATGGACCGTGTGCTGAAGCTCGACGATGGCCACCTGGTGGCCATCTGA

Protein sequence : 
MSESRMSDKAVLSCRNLGKSYDEGPESVQVLSGLNLELRAGERVAIVGSSGSGKSTLLNLLGGLDRPTQGSVWLAGEELS
ALGERARGLLRNRELGFVYQFHHLLPEFTAIENVCMPLLIGRTPIPEARERAEALLKRVGLGHRLNHKPAELSGGERQRV
AIARALVNRPGLVMLDEPTGNLDHHTAQGIQELMQELSSASRTAFLVVTHDLNLARQMDRVLKLDDGHLVAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-28 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_005931297.1 protein LolD NC_012469.1.7686878. Protein 3e-38 45
lolD YP_005931297.1 protein LolD NC_008702.1.4606598. Protein 7e-36 45