Gene Information

Name : PPUBIRD1_3496 (PPUBIRD1_3496)
Accession : YP_005931294.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : Two component heavy metal response transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3905996 - 3906676 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACTGCTGATCGTCGAAGACCAGGCCCGCACCGGCCAGTACCTGAGCCAAGGCCTGAGCGAGGCCGGCTTTGCCAC
CGAGTTGGCTACCGATGGCGAGACCGGCCAGTTCCTGGCCCTGACCGGCGACCACGACCTGCTGATCCTCGACGTGATGC
TGCCTGGCCGCGACGGCTGGCAGATTCTTCAGGCCGTGCGCCAGGCTGGCCTGGATACGCCAGTGCTGTTCCTGACCGCC
CGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAACTGGGCGCCGACGACTACCTGGTCAAGCCGTTCGCCTTTTCCGA
ACTGCTGGCCCGGGTACGCAGCCTGCTGCGCCGTGGCACCAGCCCGAGCCAGGACACGATCCTGAGCCTGGCCGACCTGC
GCCTGGACCTGATCCGCCGCCGCGCCGAGCGCGCCGGGCTGCGCATCGACCTGACCGCCAAGGAATTCTCACTCCTTGAG
CTGCTGCTGCGCCGCCAGGGTGAGGTGCTGCCAAAATCGCTGATCGCCTCGCAGGTGTGGGACATGAACTTCGATAGCGA
CACCAATGTGATCGAAGTGGCCATCCGCCGCCTGCGCCTGAAGATCGACGACCCGCACCCCAACAAGCTGATCCACACCG
TACGCGGCATGGGTTACGTACTCGAAGAGCGCAACGAGTGA

Protein sequence : 
MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGWQILQAVRQAGLDTPVLFLTA
RDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGTSPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLE
LLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEERNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-49 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-48 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator BAC0638 Protein 6e-57 69
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator BAC0083 Protein 2e-62 68
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator BAC0197 Protein 8e-58 65
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator BAC0111 Protein 2e-61 63
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator BAC0308 Protein 9e-59 62
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator BAC0347 Protein 4e-54 60
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator BAC0125 Protein 2e-57 58
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator HE999704.1.gene1528. Protein 5e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator VFG0596 Protein 2e-49 55
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator VFG1390 Protein 2e-33 44
PPUBIRD1_3496 YP_005931294.1 Two component heavy metal response transcriptional regulator VFG1389 Protein 8e-30 43