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Name : PPUBIRD1_3084 (PPUBIRD1_3084) Accession : YP_005930896.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Unknown Product : ABC transporter, permease/ATP-binding protein, putative Function : - COG functional category : - COG ID : - EC number : - Position : 3463843 - 3465636 bp Length : 1794 bp Strand : + Note : - DNA sequence : ATGTCCGATTCATCAACGCCCCTTGACGATGCCGCCCCTTCAACAAACAAAGCCCGCAGCCCGCTCAGCCGTGTGCTTTC CCCCATTCGCGGGCGGCTGGCGCTGTCTGCGGTGCTGGCTGCGGCGGGTTCGATGCTGGCTTTGGTACCGCTGGCAGGCA TTGCGCACATCGCACACCTGGCGTTGAGCGAAACCGCCACATCGGGCGCCATTGGCCGGGCCATCGCAGCCAGCATCGCC AGCCTGTTCACTGGCATGACCCTGATCACCGCAGCCGAAATGCTGGCGCACCAAGCCGACAACCACATCACCCATCACCT GCGCGTGGCGATCGGCCAGCGCCTGATGCAAGTGCCGCTCGGCTGGTTCAGCGAGCGGGCATCAAGCGAAGTGAAACGGG CCATGCAGGACGACATCGGCACACTGCACAGCCTGACCGCGCACTTTTTCACCACACTGGGCCGCGCCGTGGGCGCCGTG CTGATTTCCGTGGCCTACCTGTTCGCCATGGACTGGCGCCTTGCCGTGGTCGTGCTGCTGCCCTTCCCGGCGTTCTTCCT GTTTCTGCACCGTGCCATCAAGGCCAGCGCAGCGCATATGGGTGATGTGGTTGCGGGCATGGCGCGCATCGACAACGCGG TGGTCGAGTTCGTCAATGGCATGCCGCTGGTCAAAGCATTCGGCGGGCGCGGCAACGCGCAGGACCGCTACCGTGCAGCG GTCGATGCCTTTGCCAACACCTTCATCGGTTTCACCCGCCCACTGGTTGCGGCGATGGCACGGGCCAATGCCTTGATCGC GCCGGTGACGGTAGTGGGTGTGGTGCTGCTGGCAGGCATGGCGTTCGTGGCCCTGGGCTGGATAGAGCCGCTACAGATAC TGCCCTTTGCCTTGGTCACACCTGGGTTGTGCGCGCCGCTACAGTTGTTGCACTACATCACCCACGACCTCAACAACGCG GTGGGGGCGGCCCAGCGGGTGCAGGTCCTGCTGGACACCCCGGTGTTGCCGGCCCCTGCGGTTGGCAGCCTGCCCAACGG CAGCGAACTGCGCGTGGAGCAACTGAGCCATGCCTACGCCCCCGGCAACAACGTGCTCGATGACGTCAGCTTCACCTTGG CCCCCGGCACCACGACCGCCATCGTCGGCCCCTCTGGCGCCGGCAAGTCGACCCTGGCGCGCCTGCTGCTACGGTTTTTC GACCCAGACGCCGGGCGCATCACCCTGGGTGGCGTCGACCTGCGGCAGATCGAGAGCCGCGAACTGTACCGACGCATAGG TTTCGTGCTGCAGGAGGTGCGGCTGATCCATGCAAGCGTGGCCGACAACATCGCCCTGGGCAAACCGGCTGCAACCCGCG AACAAGTCGAAGCGGCTGCGCGCCTGGCCAACATCCACACACGCATCCTGCAACTGCCGCGTGGCTATGACTCGGTGGTG GGCGAAGACGCGCAATTGTCCGGGGGCGAACAGCAGCGCCTGAGCATTGCTCGCGCCGTGCTGCTCGACCCGCCCGTGCT GGTACTGGACGAGGCCACCGCAGCCGCCGACGCCGAGAGCGAGGCGGCGATCCAGGATGCCCTGTCGCGTTTCGCCCGGG GTCGCACCCTACTGGTCATCGCCCACCGGCTGGACACGGTGATGCATGCCGACCAGATCCTGGTGCTGGACCAAGGCGCC CTGTGTGAACAAGGGCGTCACAGCGAATTGCTCACCCGCCAAGGCCTTTATGCACGGCTGTGGGCGCAGGGTGGTTATCA GGACACCGTGAAAAAGGCGCCGCCAGCATGCTGA Protein sequence : MSDSSTPLDDAAPSTNKARSPLSRVLSPIRGRLALSAVLAAAGSMLALVPLAGIAHIAHLALSETATSGAIGRAIAASIA SLFTGMTLITAAEMLAHQADNHITHHLRVAIGQRLMQVPLGWFSERASSEVKRAMQDDIGTLHSLTAHFFTTLGRAVGAV LISVAYLFAMDWRLAVVVLLPFPAFFLFLHRAIKASAAHMGDVVAGMARIDNAVVEFVNGMPLVKAFGGRGNAQDRYRAA VDAFANTFIGFTRPLVAAMARANALIAPVTVVGVVLLAGMAFVALGWIEPLQILPFALVTPGLCAPLQLLHYITHDLNNA VGAAQRVQVLLDTPVLPAPAVGSLPNGSELRVEQLSHAYAPGNNVLDDVSFTLAPGTTTAIVGPSGAGKSTLARLLLRFF DPDAGRITLGGVDLRQIESRELYRRIGFVLQEVRLIHASVADNIALGKPAATREQVEAAARLANIHTRILQLPRGYDSVV GEDAQLSGGEQQRLSIARAVLLDPPVLVLDEATAAADAESEAAIQDALSRFARGRTLLVIAHRLDTVMHADQILVLDQGA LCEQGRHSELLTRQGLYARLWAQGGYQDTVKKAPPAC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| irp2K | YP_005163491.1 | lipid A export ATP-binding/permease protein msbA | Not tested | Not named | Protein | 4e-63 | 41 |
| irp2K | YP_005134503.1 | lipid A export ATP-binding/permease protein msbA | Not tested | Not named | Protein | 3e-63 | 41 |
