Gene Information

Name : PPUBIRD1_2995 (PPUBIRD1_2995)
Accession : YP_005930812.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : Aldehyde dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : 1.2.1.3
Position : 3353128 - 3354648 bp
Length : 1521 bp
Strand : -
Note : -

DNA sequence : 
ATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTATGGCAACTTCATCGGTGGCGAGTT
CGTGCAGCCGTTGGCTGGCCAGTACTTCACCAACAGCTCGCCGGTCAATGGCCAGCCGATTGCCGAATTCCCGCGCTCCA
CAGCCCAGGACGTCGAGCGCGCCCTGGACGCCGCGCATGCCGCCGCCGAAGCCTGGGGCAAGACCTCGGTGCAAGACCGT
GCGCGGGTACTGCTGAAAATTGCCGACCGCATCGAACAGAACCTGGAAGTGCTGGCGGTTACCGAAAGCTGGGACAACGG
CAAGGCCATACGCGAAACCTTGAATGCCGACGTGCCGCTGGCAGCGGACCACTTCCGCTATTTTGCCGGTTGCATCCGCG
CCCAGGAGGGTGGCGTAGGCGAGATCAACGAAGGCACCGTGGCTTATCACATCCACGAGCCGCTGGGCGTGGTGGGGCAG
ATCATCCCGTGGAACTTCCCGCTGCTGATGGCCGCATGGAAGCTCGCCCCGGCCTTGGCCGCTGGCAACTGCGTGGTGCT
CAAGCCCGCTGAGCAGACGCCGCTGTCGATTACCGTCTTTGCCGAACTGATCGCCGACCTGTTGCCGGCAGGCGTACTGA
ACATCGTCCAGGGCTTTGGCCGTGAGGCCGGCGAGGCGCTGGCCACCAGCAAGCGCATTGCCAAGATCGCTTTTACCGGG
TCCACTCCGGTGGGCTCGCACATCATGAAGTGCGCGGCCGAGAACATCATCCCGTCCACCGTCGAACTGGGTGGCAAGTC
GCCGAACATTTTCTTCGAAGACATCATGCAGGCCGAGCCGGCATTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGT
TCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAG
GTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCCCAGGCGTCCGAGCA
ACAGTACGACAAGATCCTTTCGTACCTGGAGATTGCCCGGGAGGAGGGTGCGCAGCTGCTCACCGGCGGTGGTGCCGAGC
GCCTGCAGGGTGACCTGGCCAGCGGCTACTACATTCAGCCAACCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCAG
GAAGAAATCTTCGGGCCGGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCACTGGCGATCGCCAACGACAGTGA
ATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGTGCATACCGCATGGGCCGCGGGATCAAGGCCGGGCGAG
TGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACC
CACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTA
A

Protein sequence : 
MIYAQPGTPGAVVSFKPRYGNFIGGEFVQPLAGQYFTNSSPVNGQPIAEFPRSTAQDVERALDAAHAAAEAWGKTSVQDR
ARVLLKIADRIEQNLEVLAVTESWDNGKAIRETLNADVPLAADHFRYFAGCIRAQEGGVGEINEGTVAYHIHEPLGVVGQ
IIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPLSITVFAELIADLLPAGVLNIVQGFGREAGEALATSKRIAKIAFTG
STPVGSHIMKCAAENIIPSTVELGGKSPNIFFEDIMQAEPAFIEKAAEGLVLAFFNQGEVCTCPSRALIQESIYEPFMAE
VMKKIAKITRGNPLDTETMVGAQASEQQYDKILSYLEIAREEGAQLLTGGGAERLQGDLASGYYIQPTLLKGNNKMRVFQ
EEIFGPVVGVTTFKDEAEALAIANDSEFGLGAGLWTRDINRAYRMGRGIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRET
HKMMLDHYQQTKNLLVSYDINPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-149 66
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 7e-157 65
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 7e-157 65
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 7e-157 65
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 5e-156 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_2995 YP_005930812.1 Aldehyde dehydrogenase VFG0082 Protein 6e-150 66