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Name : topB (PPUBIRD1_1795) Accession : YP_005929663.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Unknown Product : protein TopB Function : - COG functional category : - COG ID : - EC number : 5.99.1.2 Position : 2042707 - 2044668 bp Length : 1962 bp Strand : - Note : DNA topoisomerase III DNA sequence : ATGCGCCTGTTCCTCTGTGAAAAACCCTCCCAGGCAAAAGACATCGCCAAAGTGCTCGGCGCCAACCGCAAAGGCGACGG CTGCTGGCAAGGCACCGACATCTGCGTAACCTGGTGCATCGGCCACCTGCTGGAAACTGCCCCGCCCGACAGCTACGACG AACGTTACAAGCGCTGGAACCTGGCCGACCTGCCGATCATTCCAGACAAGTGGAAGATGCTGGTAAAGCCCAAGACCGCC AGCCAGTTCAAGGCGGTCAAGCGCCTGCTCGGTGAAGCGCGGGAGCTGGTGATTGCCACCGACGCCGACCGCGAAGGCGA AATGATTGCCCGCGAGCTGGTCGAGCATTGCCGCTACCGCGGCCCGGTGCAGCGCCTGTGGCTGTCGGCACTGGACGACG CCTCCATCCGCAAGGCCCTGGCACGCCTGCTGCCAGGCCACGAGACGTTCAACCTGTACCACTCGGCGCTGGGCCGCTCG CGCGCCGACTGGCTGATCGGCATGAACATGAGCCGGCTGTTCACCCTGCTGGGCCGCCAATCCGGCTACCAGGGTGTGCT GCCGGTAGGCCGCGTGCAAACGCCTACCTTGCGCCTGGTGGTCGACCGCGACCGCAGCATCGCCAACTTCGTGCCGGTGC CGTTCTGGGCCATCGACGTACAGCTGGAACACGCCGGCCAACGCTTCAATGCCCAATGGCGCGCCCCCGAAGACGCCTGT GATGACCAAGGCCGCTGCCTGAAGCAAAGCTTGGCACAGCAGGCCGCCACCGACATCGGCCATGCTGGCACTGCCCGAGC GGTAAAGGTAGCGACCGAGCGTGTGCGCGAAGCTGCACCGCTGCCCTTCGACCTTGGCACCCTGCAGGAGCTGTGCTCGA AAAAGTTCGGCCTCGGCGCCCAGGAAACCCTCGACATTGCCCAGGCACTGTACGAAACACACAAGCTGATCACCTACCCG CGCAGCGATTGCGGCTATTTGCCACAAAGCCAGCACGCAGAGGCACCCGCCATCCTCTCTGCCCTGCAACGGGCCGATGC CAGCCTTGCGCCGCTGCAGCCGTACCTGGAGCCGCAACGCCGCTCGCGGGCGTGGAACGACGCCAAAGTCAGCGCTCACC ATGGCATCATCCCCACCGCCGCCGCCAGCGACCCCTCGCGCCTGCCGGCCAAGCACAAGGCCGTGTACACCCTGATCCGC GCCCGCTATCTGGCGCAGTTCCTGCCCAACCATGAGTACGACCGCACCCAGGCCGACTTCGACTGCGCCGGTCATGCGCT GCGTGCTGTGGGCAAACAGATCGTCGAGCCGGGCTGGCGCCGCGCCTTGCCCGAAGCGCTGACCCCGGCCAAAGGCCGAG AGGCACCACCGGCCCAGGTGTTGCCAGCGCTGCGCGAAGGCCAGGACTGCAACGTACACGGCCTGCAGCTGAAAGACCTG TGGACCCAGCCACCCAAGCCATTTACCGAAGGCGACCTGATCAAGGCGATGAAAAACGTGGCCAAGCTGGTGGATGACCC TCGGCTGAAGCAGAAGCTCAAGGAAACCACCGGCATCGGCACCGAAGCCACCCGCGCCAGCATTATTCAGGGCCTGCTCG ACCGCGGTTACCTGGTGAAGAACGGCAAGGCGTTGTCGGCCACCCCTGCGGCCTTCAGCCTGATCGACGCCGTTCCCCGA GCCATTGCCGACCCCGGCACCACGGCGATCTGGGAGCAGGCGCTGGACATGGTGCAAAGCGGCGAGATGCCCCTGGAAGA GTTCGTCGCCCGGCAGTCAGCGTGGATGGGCAAGCTGGTGGAGCGTTGCAGCGGCATGCGCATGACCATCAGCGGGCCAG CGGCCGGGGCGGCGCCGCCCTGGAAGAAGAAACGTCGCGGTGGCGGGAAGAGCAAAGCGACTCGAAGCAAGGCGACCCCA AGCAAGCCACGGCAGGCGCGGAAAAAACGAGCCCCCCTGTAG Protein sequence : MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWNLADLPIIPDKWKMLVKPKTA SQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC DDQGRCLKQSLAQQAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYP RSDCGYLPQSQHAEAPAILSALQRADASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIR ARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVHGLQLKDL WTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR AIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKLVERCSGMRMTISGPAAGAAPPWKKKRRGGGKSKATRSKATP SKPRQARKKRAPL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 65 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 63 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-151 | 51 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 9e-152 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 9e-152 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 7e-152 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-150 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 9e-119 | 43 |
