Gene Information

Name : topB (PPUBIRD1_1795)
Accession : YP_005929663.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Unknown
Product : protein TopB
Function : -
COG functional category : -
COG ID : -
EC number : 5.99.1.2
Position : 2042707 - 2044668 bp
Length : 1962 bp
Strand : -
Note : DNA topoisomerase III

DNA sequence :
ATGCGCCTGTTCCTCTGTGAAAAACCCTCCCAGGCAAAAGACATCGCCAAAGTGCTCGGCGCCAACCGCAAAGGCGACGG
CTGCTGGCAAGGCACCGACATCTGCGTAACCTGGTGCATCGGCCACCTGCTGGAAACTGCCCCGCCCGACAGCTACGACG
AACGTTACAAGCGCTGGAACCTGGCCGACCTGCCGATCATTCCAGACAAGTGGAAGATGCTGGTAAAGCCCAAGACCGCC
AGCCAGTTCAAGGCGGTCAAGCGCCTGCTCGGTGAAGCGCGGGAGCTGGTGATTGCCACCGACGCCGACCGCGAAGGCGA
AATGATTGCCCGCGAGCTGGTCGAGCATTGCCGCTACCGCGGCCCGGTGCAGCGCCTGTGGCTGTCGGCACTGGACGACG
CCTCCATCCGCAAGGCCCTGGCACGCCTGCTGCCAGGCCACGAGACGTTCAACCTGTACCACTCGGCGCTGGGCCGCTCG
CGCGCCGACTGGCTGATCGGCATGAACATGAGCCGGCTGTTCACCCTGCTGGGCCGCCAATCCGGCTACCAGGGTGTGCT
GCCGGTAGGCCGCGTGCAAACGCCTACCTTGCGCCTGGTGGTCGACCGCGACCGCAGCATCGCCAACTTCGTGCCGGTGC
CGTTCTGGGCCATCGACGTACAGCTGGAACACGCCGGCCAACGCTTCAATGCCCAATGGCGCGCCCCCGAAGACGCCTGT
GATGACCAAGGCCGCTGCCTGAAGCAAAGCTTGGCACAGCAGGCCGCCACCGACATCGGCCATGCTGGCACTGCCCGAGC
GGTAAAGGTAGCGACCGAGCGTGTGCGCGAAGCTGCACCGCTGCCCTTCGACCTTGGCACCCTGCAGGAGCTGTGCTCGA
AAAAGTTCGGCCTCGGCGCCCAGGAAACCCTCGACATTGCCCAGGCACTGTACGAAACACACAAGCTGATCACCTACCCG
CGCAGCGATTGCGGCTATTTGCCACAAAGCCAGCACGCAGAGGCACCCGCCATCCTCTCTGCCCTGCAACGGGCCGATGC
CAGCCTTGCGCCGCTGCAGCCGTACCTGGAGCCGCAACGCCGCTCGCGGGCGTGGAACGACGCCAAAGTCAGCGCTCACC
ATGGCATCATCCCCACCGCCGCCGCCAGCGACCCCTCGCGCCTGCCGGCCAAGCACAAGGCCGTGTACACCCTGATCCGC
GCCCGCTATCTGGCGCAGTTCCTGCCCAACCATGAGTACGACCGCACCCAGGCCGACTTCGACTGCGCCGGTCATGCGCT
GCGTGCTGTGGGCAAACAGATCGTCGAGCCGGGCTGGCGCCGCGCCTTGCCCGAAGCGCTGACCCCGGCCAAAGGCCGAG
AGGCACCACCGGCCCAGGTGTTGCCAGCGCTGCGCGAAGGCCAGGACTGCAACGTACACGGCCTGCAGCTGAAAGACCTG
TGGACCCAGCCACCCAAGCCATTTACCGAAGGCGACCTGATCAAGGCGATGAAAAACGTGGCCAAGCTGGTGGATGACCC
TCGGCTGAAGCAGAAGCTCAAGGAAACCACCGGCATCGGCACCGAAGCCACCCGCGCCAGCATTATTCAGGGCCTGCTCG
ACCGCGGTTACCTGGTGAAGAACGGCAAGGCGTTGTCGGCCACCCCTGCGGCCTTCAGCCTGATCGACGCCGTTCCCCGA
GCCATTGCCGACCCCGGCACCACGGCGATCTGGGAGCAGGCGCTGGACATGGTGCAAAGCGGCGAGATGCCCCTGGAAGA
GTTCGTCGCCCGGCAGTCAGCGTGGATGGGCAAGCTGGTGGAGCGTTGCAGCGGCATGCGCATGACCATCAGCGGGCCAG
CGGCCGGGGCGGCGCCGCCCTGGAAGAAGAAACGTCGCGGTGGCGGGAAGAGCAAAGCGACTCGAAGCAAGGCGACCCCA
AGCAAGCCACGGCAGGCGCGGAAAAAACGAGCCCCCCTGTAG

Protein sequence :
MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWNLADLPIIPDKWKMLVKPKTA
SQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRS
RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC
DDQGRCLKQSLAQQAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYP
RSDCGYLPQSQHAEAPAILSALQRADASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIR
ARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVHGLQLKDL
WTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR
AIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKLVERCSGMRMTISGPAAGAAPPWKKKRRGGGKSKATRSKATP
SKPRQARKKRAPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 0.0 65
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 0.0 63
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 0.0 63
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 2e-151 51
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 7e-152 50
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 9e-152 50
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 9e-152 50
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 2e-150 49
topB AAW83109.1 TopB Not tested GGI Protein 9e-119 43