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Name : PPUBIRD1_1710 (PPUBIRD1_1710) Accession : YP_005929581.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : - COG ID : - EC number : 4.1.1.19 Position : 1941172 - 1943445 bp Length : 2274 bp Strand : + Note : - DNA sequence : ATGTCCTTCGGAGGTAGCCACCTGATGTACAAGGACCTCAAGTTCCCGATCCTCATCGTCCACCGCGCCATCAAGGCCGA CAGTGTTGCTGGCGAGCGTGTGCGCGGCATCGCCGAGGAATTGCGCCAGGATGGCTTTGCCATTCTCGCCGCCGCTGACC ACGCCGAAGCACGGCTGGTCGCCGCCACCCACCACGGCCTGGCCTGCATGCTCATCGCGGCCGAAGGCGCTGGCGAGAAC ACCCATCTGTTGCAGAACATGGCCGAGCTGATTGGCCTGGCCCGCTTGCGTGCACCCAACCTGCCGATCTTCGCCCTGGG CGAGCAGGTGACCTTGGAAAATGCCCCCGCCGAAGCCATGAGCGAGCTCAACCAGCTGCGTGGCATCCTTTACCTGTTCG AAGACACCGTGCCGTTTCTCGCCCGCCAGGTAGCGCGTGCTGCACACACCTACCTCGACGGCCTGCTGCCGCCGTTCTTC AAGGCGCTGGTGCAGCACACCGCGCAGTCCAACTATTCCTGGCACACTCCAGGCCATGGTGGCGGTGTGGCCTATCATAA AAGCCCGGTAGGCCAAGCCTTTCACCAGTTCTTCGGGGAAAACACCCTGCGTTCGGACCTGTCCGTTTCCGTGCCGGAGC TGGGTTCGCTGCTCGACCACACAGGCCCGCTGGCCGAAGCCGAGGCCAGGGCGGCGCGCAACTTTGGCGCCGACCACACC TTCTTCGTCATCAATGGTACCTCCACGGCCAACAAGATCGTCTGGCACGCCATGGTCGGCCGTGACGACCTGGTGCTGGT GGACCGCAACTGCCACAAGTCGGTGGTGCACGCGATCATCATGACGGGTGCCATCCCGTTGTACCTGTGCCCGGAGCGCA ACGAACTGGGCATCATCGGCCCGATCCCGCTCAGCGAGTTCAGCCCCGAGGCGATCGCCGCGAAGATTCAGGCCAACCCC CTTGCCCGGGATCGGGGGCAGCGTATCAAGCTGGCGGTAGTGACCAACTCCACCTACGACGGGCTGTGTTACCACGCCGG GCTGATCAAGCAGGCCCTGGGTGCCAGTGTCGAGGTGCTGCACTTCGACGAGGCCTGGTTTGCCTATGCCGCGTTCCACG ACTTTTTCACCGGGCGCTACGCCATGGGCACCGCCTGCGCGGCAGACAGCCCGCTGGTGTTCAGTACCCACTCCACCCAC AAGCTGCTGGCGGCGTTCAGCCAGGCCTCGATGATTCATGTGCAGGACGGTGCCAGGCGGCAGCTGGACCGGGACCGTTT CAACGAAGCGTTCATGATGCACATCTCTACCTCGCCGCAGTACAGTATTCTCGCCTCGCTGGATGTGGCTTCCACCATGA TGGAAGGGCCGGCTGGGCGCTCGCTGCTGCAGGAGATGTTCGACGAGGCCTTGAGTTTTCGTCGTGCCCTGGCCAACCTG CGTGAGCACATTGCCGCAGAGGACTGGTGGTTCAGCATCTGGCAGCCGCCAAGTGCCGAGGGCATGCCCCGTCTGGCCGC GCAGGACTGGCTGCTGCAGCCGGGGGCGCAATGGCATGGGTTTGGTGAAGTGGTGACCGACTATGTGCTGCTCGACCCGC TGAAGGTAACCTTGGTAATGCCGGGCCTGAGCGCAGACGGTGTGCTGGGCGCGCGCGGCATCCCGGCGGCGGTAGTCAGC AAGTTTCTCTGGGAGCGCGGGCTGGTGGTGGAAAAAACGGGCCTGTACAGCTTCCTGGTACTGTTTTCCATGGGCATCAC CAAGGGCAAGTGGAGCACCTTGCTCACCGAGCTGCTGGAGTTCAAGCGCCACTATGACGGCAACACCCCAATCAGCAGCT GCCTGCCCAGTGTGGGGTCTGCCGACGCCTTGCGCTACCAGGGCATGGGCCTGCGCGACCTGTGCGACCAGTTACATGAC TGCTACCGCGCCAATGCCACGGCCAAGCAGCTAAAGCGGCTGTTCACCCGTTTGCCGGAGGTGGCCGTCAGCCCGGCCCA GGCCTATGACAAGATGGTGCGTGGCGAAGTGGAGGCGGTGCCGATCGAGGCACTGCTGGGGCGTGTGGCGGCGGTGATGC TGGTGCCGTACCCGCCTGGCATCCCATTGATCATGCCGGGTGAGCGGTTCACCGAGGCGACCCGCTCGATCCTTGATTAC CTGGCATTCGCCCGAGCATTCAACCAGGGCTTTCCCGGCTTTGTCGCCGATGTGCACGGCCTGCAGCACGAAGGGGGCCG CTACACGGTGGATTGCATCACGGAATGCGCGTGA Protein sequence : MSFGGSHLMYKDLKFPILIVHRAIKADSVAGERVRGIAEELRQDGFAILAAADHAEARLVAATHHGLACMLIAAEGAGEN THLLQNMAELIGLARLRAPNLPIFALGEQVTLENAPAEAMSELNQLRGILYLFEDTVPFLARQVARAAHTYLDGLLPPFF KALVQHTAQSNYSWHTPGHGGGVAYHKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHT FFVINGTSTANKIVWHAMVGRDDLVLVDRNCHKSVVHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSPEAIAAKIQANP LARDRGQRIKLAVVTNSTYDGLCYHAGLIKQALGASVEVLHFDEAWFAYAAFHDFFTGRYAMGTACAADSPLVFSTHSTH KLLAAFSQASMIHVQDGARRQLDRDRFNEAFMMHISTSPQYSILASLDVASTMMEGPAGRSLLQEMFDEALSFRRALANL REHIAAEDWWFSIWQPPSAEGMPRLAAQDWLLQPGAQWHGFGEVVTDYVLLDPLKVTLVMPGLSADGVLGARGIPAAVVS KFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRHYDGNTPISSCLPSVGSADALRYQGMGLRDLCDQLHD CYRANATAKQLKRLFTRLPEVAVSPAQAYDKMVRGEVEAVPIEALLGRVAAVMLVPYPPGIPLIMPGERFTEATRSILDY LAFARAFNQGFPGFVADVHGLQHEGGRYTVDCITECA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 4e-127 | 42 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 3e-125 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PPUBIRD1_1710 | YP_005929581.1 | lysine decarboxylase | VFG1670 | Protein | 3e-127 | 42 |
