Gene Information

Name : PPUBIRD1_1624 (PPUBIRD1_1624)
Accession : YP_005929499.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : Winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1820855 - 1821538 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGCACGTTCTGCTCTGCGAGGACGACGACCTGATCGCCGCCGGCATCTGCGCCGGCCTCACCGCCCAGGGCCTGACTGT
GGACCGGGTGGGTAACGCCGCTGCTGCGCGGGCGATGCTGCAGGCCGCGCAGTTCGACGTGATGATTCTCGACCTCGGCC
TGCCCGACGAAGATGGCCTCAAGCTGCTGCGCCGCCTGCGCGAAAAAGGCGAGACCCTGCCGGTACTGGTGCTCACCGCC
CGCGATGCCGTCACCGATCGTGTCGATGGCCTGCAGGCCGGTGCCGACGATTACCTGCTCAAGCCCTTCGATCTGCGCGA
GCTGGCCGCACGCCTGCATACCTTGCTGCGGCGGGTGGCCGGGCGGGCGGTGAACGTGATCGAGCACGGCCCGCTGCGCT
ATGACCCGAGTAGCTGCGAGGCGACCCTGGCCGGCCAGCATGTCGACCTGTCCCGCCGTGAGCAGGCCCTGCTCCAGGCG
CTGCTGCAGAACCCCGGGCGAGTGCTGTCCAGCGAGCAACTGAAAGACTGCGTGTATGGTTTCAGCGACGAAGTCGAGAG
CAACGCCCTGAACGTGCACATCCACCACCTGCGGCGCAAGCTGGGTAACGGCATTGTCGAGACCGTGCGGGGCCTGGGCT
ACCGGCTGGGCCCGGCGCAGGCACCGCAAGAGGCCGCATCATGA

Protein sequence : 
MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGLPDEDGLKLLRRLREKGETLPVLVLTA
RDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAGRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQA
LLQNPGRVLSSEQLKDCVYGFSDEVESNALNVHIHHLRRKLGNGIVETVRGLGYRLGPAQAPQEAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-48 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_1624 YP_005929499.1 Winged helix family two component transcriptional regulator BAC0487 Protein 7e-26 43
PPUBIRD1_1624 YP_005929499.1 Winged helix family two component transcriptional regulator CP000647.1.gene1136. Protein 9e-20 41
PPUBIRD1_1624 YP_005929499.1 Winged helix family two component transcriptional regulator BAC0530 Protein 1e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_1624 YP_005929499.1 Winged helix family two component transcriptional regulator VFG1389 Protein 2e-21 44
PPUBIRD1_1624 YP_005929499.1 Winged helix family two component transcriptional regulator VFG0473 Protein 2e-30 43