Gene Information

Name : PPUBIRD1_1611 (PPUBIRD1_1611)
Accession : YP_005929486.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : Siderophore biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1793515 - 1794528 bp
Length : 1014 bp
Strand : +
Note : -

DNA sequence :
ATGCCGTTCGATGCCGCTTCGCAGCCACAGTCACCGCCACGCTGGCGCAGCCTCAGTGCCGAGGAGGGCGACAGCTGGCT
AAGCCTGGCCCTTGAAGGCCGCCCCCTGATCCAGTTGCGACTGGAGGCTGGCGCTTCTCTGCACGTTCACCTTGAGCGCT
TTTGCCCCGAGCGCCCCTACCAAGCCTTGTGGGCCGCCTGTTATTGGTTGCTGTCGCGCGATACGGCCTGCCAGCGCCTG
ACCTGGCACCTGCCCGAAGTGTTGCCGCAGGCGTTGGCCAGTGGCCTGCTGCTGGCCGGTGAACAGCCTGGCCAGTACCT
GTGCGAGCGCGCACTGTTCTGGCAACTGCCGCAGCCGTGGCTGGGCGAGTCGGTTGCCGGGGTATATCCGCAGCAGATGC
AGATCAGCAACGGTAAGCGCCACCCGCGGCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTG
GGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGT
GGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGT
TGACGTTGATCGGTTGTTTCGATGACGAGCCGTTTGCCTACTTCGAGGCGTACTGGGCCAAGGAGGACCGCATTGCCCCC
TTCTACCCGGCCGATGACTACGACCGTGGTATCCATATGCTGGTGGGAGAGGAGAGCCACCGGGGGCCGCACAAGGTGGC
CAGCTGGCTATCGGCGTTGGTGCACTACCTTTTCCTGGATGACCCGCGCACCCAGCGGGTGGTGGCCGAGCCGCGCGCCG
ACAATGGCAAGATGATTGGCTACATGCACGACCAATGTTTCCATTGCGACAAGGAGTTCGACTTTCCACACAAGCGGGCG
GCGTTGATGATTCTGGGGCGGGAGAGGTTTTTCGATCGTTGCAAGCTGACGTAG

Protein sequence :
MPFDAASQPQSPPRWRSLSAEEGDSWLSLALEGRPLIQLRLEAGASLHVHLERFCPERPYQALWAACYWLLSRDTACQRL
TWHLPEVLPQALASGLLLAGEQPGQYLCERALFWQLPQPWLGESVAGVYPQQMQISNGKRHPRRAPKPRGEVYRRFDARL
GSWVSLRTLEIEHDLERFNRWQNNPRVEAFWQEGGTLAQHREYLAKLEADPHTLTLIGCFDDEPFAYFEAYWAKEDRIAP
FYPADDYDRGIHMLVGEESHRGPHKVASWLSALVHYLFLDDPRTQRVVAEPRADNGKMIGYMHDQCFHCDKEFDFPHKRA
ALMILGRERFFDRCKLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iucB YP_002414045.1 aerobactin siderophore biosynthesis protein, N(6)-hydroxylysine acetylase Virulence Not named Protein 5e-50 45
iucB NP_839222.1 siderophore biosynthesis protein Virulence SHI-2 Protein 3e-50 45
iucB NP_709455.1 siderophore biosynthesis protein Virulence SHI-2 Protein 3e-50 45
iucB AAD44747.1 IucB Virulence SHI-2 Protein 2e-50 45
iucB AAK71632.1 IucB Virulence SHI-3 Protein 2e-50 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_1611 YP_005929486.1 Siderophore biosynthesis protein VFG0616 Protein 1e-50 45
PPUBIRD1_1611 YP_005929486.1 Siderophore biosynthesis protein VFG1082 Protein 1e-50 45
PPUBIRD1_1611 YP_005929486.1 Siderophore biosynthesis protein VFG0939 Protein 2e-50 45