Gene Information

Name : fliP (PPUBIRD1_1503)
Accession : YP_005929380.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1683135 - 1683890 bp
Length : 756 bp
Strand : +
Note : flagellar biosynthesis protein FliP

DNA sequence :

ATGAGCGGCGCGCTGCGTACGTTGTTGACTCTGGCGCTGCTGCTGGCTGCGCCGCTGGCCCTGGCCGCCGACCCGCTGTC
GATCCCGGCCATCACCCTGTCCAACACCCCGGACGGGCAACAGGAATATTCGGTCAGCCTGCAAATCCTGCTGATCATGA
CCGCGCTGAGCTTCATCCCGGCGTTCGTCATTCTGATGACCAGCTTTACCCGCATCATCATCGTGTTTTCGATTTTGCGC
CAGGCGCTGGGCCTGCAGCAGACGCCGTCCAACCAGTTGCTGACTGGCATGGCGCTGTTCCTGACCATGTTCATCATGGC
GCCGGTGTTCGATCGGGTGAACCAGGACGCGCTGCAGCCTTACCTGAAGGAGCAGATGACTGCCCAGCAGGCGATCGACA
AGGCTCAGGGGCCGCTCAAGGACTTCATGCTGGCGCAAACCCGGCAAAGCGACCTCGACCTGTTCATGCGCTTGTCCAAG
CGTACTGACATCGCCGGCCCCGACCAGGTGCCGCTGACGATCCTGGTGCCGGCGTTCGTCACTTCCGAGCTGAAGACGGC
GTTCCAGATCGGTTTCATGATCTTCATCCCGTTCCTGATCATCGACATGGTCGTGGCCAGTGTGCTGATGGCCATGGGTA
TGATGATGCTGTCGCCGCTGATCATCTCGCTACCGTTCAAGATCATGCTGTTCGTGCTGGTCGATGGCTGGGCGTTGATC
ATGGGCACCCTGGCCAGCAGTTTCGGCGGCGTCTGA

Protein sequence :

MSGALRTLLTLALLLAAPLALAADPLSIPAITLSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILR
QALGLQQTPSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSK
RTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI
MGTLASSFGGV

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	1e-29	42
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	1e-29	42
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	1e-29	42
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	1e-31	42
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	9e-33	41
yscR	NP_456109.1	putative type III secretion protein	Virulence	SPI-2	Protein	3e-32	41
yscR	NP_805090.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-32	41
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	1e-32	41
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	1e-32	41
hrcR	AAT96146.1	HrcR	Virulence	T-PAI	Protein	1e-22	41
hrcR	AAT96200.1	HrcR	Virulence	T-PAI	Protein	9e-23	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	9e-33	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	9e-33	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	6e-33	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	8e-33	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	8e-33	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	4e-32	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	6e-33	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	6e-33	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	6e-33	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	6e-33	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	6e-33	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
fliP	YP_005929380.1	protein FliP	VFG1259	Protein	2e-89	83
fliP	YP_005929380.1	protein FliP	VFG2016	Protein	8e-67	61
fliP	YP_005929380.1	protein FliP	VFG2494	Protein	2e-65	60
fliP	YP_005929380.1	protein FliP	VFG2338	Protein	9e-62	59
fliP	YP_005929380.1	protein FliP	VFG0519	Protein	5e-33	41
fliP	YP_005929380.1	protein FliP	VFG0188	Protein	1e-34	41
fliP	YP_005929380.1	protein FliP	VFG0044	Protein	1e-34	41
fliP	YP_005929380.1	protein FliP	VFG0394	Protein	7e-33	41
fliP	YP_005929380.1	protein FliP	VFG0827	Protein	4e-33	41