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Name : xcpS (PPUBIRD1_1098) Accession : YP_005928985.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Virulence Product : XcpS Function : - COG functional category : - COG ID : - EC number : - Position : 1240505 - 1241707 bp Length : 1203 bp Strand : + Note : general secretion pathway protein F DNA sequence : ATGCCGACCTATCGCTACCAGGCCGTTGACCTTGCCGGCAAATCGCACAAGGCCAGCCTGCAGGCTGACAGTGAACGCCA CGCTCGCCAGCTGTTGCGCGAACAGGGCCTGTTCGCCCGCCAGTTGCAGCGTCATGACGCCGGCAGCCGACAGCCCCGAC GCCAGCGCCTGAGCCGCGCCCAGCTGTGTGAGCTGACCCGTCAGCTGGCCACCTTGACCGGGGCCGGCATTCCCTTGGTC GATGCCCTTGCCACCCTTGAACGGCAACTGCGTCAGCCTGCCCTGCACAGTGTGCTGGTGGCCTTGCGCGGCTCACTGGC CGAAGGCCTGGGCCTGGCCCGCAGCCTGGCCCGGCAGGGCGCACCGTTCACTGGCTTGTACTGCGCGCTGGTCGAGGCCG GCGAACGTTCCGGGCACCTGGCCCAGGTGCTGACCCGCTTGGCCGACCACCTGGAACAGGTGCAACGCCAGCAACACAAG GCCCGCACAGCGCTGATCTACCCCGCTGTGCTGATGGGTGTGTCGCTGGCCGTGGTGATTGGCCTGATGACGTTCGTCGT GCCCAAACTCACCGAGCAATTCGCCCATGCCGGGCAAAGCCTGCCGCTGATCACCTCGTTGCTGATCGGCCTGAGCCAGG GGCTGGTGCACGCCGGGCCCTGGCTGTTAGGGGTGACGCTGTTGCTCGGGGGGCTGGCTGGCTGGTTGTTGCGCAAACCG CACTGGTGCCTGCGTCGCGACCAGCTGCTGCTGCGCCTGCCGCGTATTGGCAGCCTGCTGCAGGTGCTGGAGAGCGCGCG CCTGGCGCGCAGCCTGGCGATTCTCACTGGCAGTGGCGTGGCCTTGCTCGAAGCCTTGCAAGTGGCCACCGAAACCATCG GCAACCGGCGTATCCGCCTGGCCATGGAGCAGGTGCGCCAACACGTGCAGGGCGGCACCAGCCTGCACCGTGCGCTGGAT GCCAGCCAGCAATTCCCGCCGCTGCTGGTGAACATGGTCGGCAGCGGCGAGGCCAGCGGCACCCTGGCCGACATGCTCGA GCGCGTGGCCGACGACCAGGAGCGCGGTTTTGCCCGCCAGGTCGATACCGCCATGGCGCTGTTCGAACCCCTGATGATCC TGGTGATGGGCGCCGTGGTGCTGTTCATCGTGCTGGCGGTGCTGCTGCCGATCATGCAACTCAACCAGGGCCTGCAATTG TGA Protein sequence : MPTYRYQAVDLAGKSHKASLQADSERHARQLLREQGLFARQLQRHDAGSRQPRRQRLSRAQLCELTRQLATLTGAGIPLV DALATLERQLRQPALHSVLVALRGSLAEGLGLARSLARQGAPFTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHK ARTALIYPAVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVHAGPWLLGVTLLLGGLAGWLLRKP HWCLRRDQLLLRLPRIGSLLQVLESARLARSLAILTGSGVALLEALQVATETIGNRRIRLAMEQVRQHVQGGTSLHRALD ASQQFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFIVLAVLLPIMQLNQGLQL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 4e-51 | 42 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-50 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| xcpS | YP_005928985.1 | XcpS | VFG0181 | Protein | 1e-53 | 42 |
| xcpS | YP_005928985.1 | XcpS | VFG2049 | Protein | 3e-49 | 41 |
