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Name : PPUBIRD1_1097 (PPUBIRD1_1097) Accession : YP_005928984.1 Strain : Pseudomonas putida BIRD-1 Genome accession: NC_017530 Putative virulence/resistance : Virulence Product : Type II secretion system protein E Function : - COG functional category : - COG ID : - EC number : - Position : 1239053 - 1240501 bp Length : 1449 bp Strand : + Note : - DNA sequence : ATGCTGCCCTATCGTCAGGCACGGCAGAGCGGAGTGGCCATGGCCCCGGCAGAGCAGGGCTGGCAGCTATGGCTGCGGCC CGACGCCGACAATGCCCAGTTGCAGGAACTGCTGCGTGTGCATGGCCAGCCAAGCCTGCTCGAATACCTGGAGCCTGCGC TGTTCAACGAACGCCTTGGCCAGCTGTATCAGGCCGGCGATGCCGCCACCGAAGCGCTGATCGAAGGTATCGGCGACCAG GTCGACCTGGATAGCCTGATGAGCGAGATGCCGCGCATCGAAGACCTGCTGGAAAGCGACGACGAAGCCCCGGTAATCCG CCTGATCAACGGCCTGTTCGGCCAGGCGCTGCGGCTGCGCGCCTCGGATATCCATATCGAGACCTTCGAGCAGAGCCTGG TGGTGCGCTTGCGGGTCGATGGCCACCTGCGCGAGGTGCTGCGTCCTCCACGTGCGTTGTCGGCCATGCTGGTATCACGG ATCAAGGTCATGGCCCGCCTGGACATCGCTGAAAAGCGTCAGCCCCAGGACGGTCGCATCACCTTGCGTGCGGCGGGGCG CGAAGTGGACGTACGGGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTGATGCGCGTGCTCGACAAGCAGGCCA GCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTCTTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGC ATCGTGTTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCCTGTACGCCAGCCTGAACAGCCTCAACGATGGCAG CCGCAACATCCTCACCGTCGAGGATCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCG GGCTGACGTTTGCCAGTGGCCTGCGCGCCATCCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAG GAGACTGCACAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAGCGCGGTAGG CGCAGTGACCCGCCTGCGCGACATGGGCATCGAGCCCTTCCTGATCGCCTCGTGCCTGCGCGGCGTCCTGGCTCAGCGCC TGGTGCGGCGTTTGTGCAGCTGTGCCGTGGCGCATCCGCTACAGGTTGCCGAGCGCGAGCTGTGGCCTGAGCTGGCGGCG CTGGGCAGCACTTATCACGCCGTGGGTTGCGAGCAGTGCCAGGGCAGCGGTTATATGGGGCGACTGGGGCTGTACGAATT CATCGAGCTGGACGCTGGGCTCATCGGTCTGTTGTACGACGGCGCCAGTGAGCTGGCCATGCAGGATTACCTGGCTGACC GGCGCCAAAGCCTGGTAGCGATGGCCAGCGATTGCCTGGCCCGCGGTGAGACCAGCCTGGCCGAAGTGCTGCGCGTGGTG CAGGGCTAA Protein sequence : MLPYRQARQSGVAMAPAEQGWQLWLRPDADNAQLQELLRVHGQPSLLEYLEPALFNERLGQLYQAGDAATEALIEGIGDQ VDLDSLMSEMPRIEDLLESDDEAPVIRLINGLFGQALRLRASDIHIETFEQSLVVRLRVDGHLREVLRPPRALSAMLVSR IKVMARLDIAEKRQPQDGRITLRAAGREVDVRVSTLPGIHGERVVMRVLDKQASLLALDNLGMPAAVLQGLRSCLARPNG IVLSTGPTGSGKTTTLYASLNSLNDGSRNILTVEDPVEYAIAGIGQTAINPRAGLTFASGLRAILRQDPDVIMLGEIRDQ ETAQIAVQASLTGHLVLSTLHTNSAVGAVTRLRDMGIEPFLIASCLRGVLAQRLVRRLCSCAVAHPLQVAERELWPELAA LGSTYHAVGCEQCQGSGYMGRLGLYEFIELDAGLIGLLYDGASELAMQDYLADRRQSLVAMASDCLARGETSLAEVLRVV QG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-106 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-106 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PPUBIRD1_1097 | YP_005928984.1 | Type II secretion system protein E | VFG0182 | Protein | 3e-105 | 56 |
| PPUBIRD1_1097 | YP_005928984.1 | Type II secretion system protein E | VFG2048 | Protein | 2e-105 | 56 |
| PPUBIRD1_1097 | YP_005928984.1 | Type II secretion system protein E | VFG1876 | Protein | 2e-109 | 51 |
| PPUBIRD1_1097 | YP_005928984.1 | Type II secretion system protein E | VFG2426 | Protein | 2e-65 | 47 |
| PPUBIRD1_1097 | YP_005928984.1 | Type II secretion system protein E | VFG1880 | Protein | 7e-69 | 45 |
| PPUBIRD1_1097 | YP_005928984.1 | Type II secretion system protein E | VFG0112 | Protein | 4e-71 | 41 |
