Gene Information

Name : CCDC5079_1048 (CCDC5079_1048)
Accession : YP_005912471.1
Strain : Mycobacterium tuberculosis CCDC5079
Genome accession: NC_017523
Putative virulence/resistance : Unknown
Product : transposase IS6110
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1259235 - 1260119 bp
Length : 885 bp
Strand : -
Note : -

DNA sequence :
TTGCGGTGGGGTGTCGAGTCGATCTGCACACAGCTGACCGAGCTGGGTGTGCCGATCGCCCCATCGACCTACTACGACCA
CATCAACCGGGAGCCCAGCCGCCGCGAGCTGCGCGATGGCGAACTCAAGGAGCACATCAGCCGCGTCCACGCCGCCAACT
ACGGTGTTTACGGTGCCCGCAAAGTGTGGCTAACCCTGAACCGTGACGGCATCGAGGTGGCCAGATGCACCGTCGAACGG
CTGATGACCAAACTCGGCCTGTCCGGGACCACCCGCGGCAAAGCCCGCAGGACCACGATCGCTGATCCGGCCACGGCCCG
TCCCGCCGATCTCGTCCAGCGCCGCTTCGGACCACCAGCACCTAACCGGCTGTGGGTAGCAGACCTCACCTATGTGTCGA
CCTTGGCAGGGCTCGCCTACGTGGCCTTTGTCACCGACGCCTACGCTCGCAGGATCCTGGGCTGGCGGGTCGCTTCCACG
ATGGCCACCTCCATGGTCCTCGACGCGATCGAGCAAGCCATCTGGACCCGCCAACAAGAAGGCGTACTCGACCTGAAAGA
CGTTATCCACCATACGGATAGGGGATCTCAGTACACATCGATCCGGTTCAGCGAGCGGCTCGCCGAGGCAGGCATCCAAC
CGTCGGTCGGAGCGGTCGGAAGCTCCTATGACAATGCACTAGTCGAGACGATCAACGGCCTATACAAGACCGAGCTGATC
AAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCG
CCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCG
GCTGA

Protein sequence :
MRWGVESICTQLTELGVPIAPSTYYDHINREPSRRELRDGELKEHISRVHAANYGVYGARKVWLTLNRDGIEVARCTVER
LMTKLGLSGTTRGKARRTTIADPATARPADLVQRRFGPPAPNRLWVADLTYVSTLAGLAYVAFVTDAYARRILGWRVAST
MATSMVLDAIEQAIWTRQQEGVLDLKDVIHHTDRGSQYTSIRFSERLAEAGIQPSVGAVGSSYDNALVETINGLYKTELI
KPGKPWRSIEDVELATARWVDWFNHRRLYQYCGDVPPVELEAAYYAQRQRPAAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-47 54
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-55 54
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-47 53
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-58 51
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 9e-58 51
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 9e-58 51
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 9e-58 51
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-59 51
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 8e-59 51
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 4e-58 51
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-59 51
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-60 51
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-60 51
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-59 50
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-59 50
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-57 50
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-59 50
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-59 50
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-59 50
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-56 50
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-42 49
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-52 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 8e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CCDC5079_1048 YP_005912471.1 transposase IS6110 VFG1602 Protein 3e-56 50