Gene Information

Name : LRHK_1016 (LRHK_1016)
Accession : YP_005872658.1
Strain : Lactobacillus rhamnosus ATCC 8530
Genome accession: NC_017491
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 967722 - 968861 bp
Length : 1140 bp
Strand : -
Note : -

DNA sequence :
ATGCGCATTGAAGCTTTGATGATAAGAATTTTCAAAGAAATGTTACGTGACAAACGCACACTGGCCTTAATGTTTATCGC
GCCTTTGTTTATCATGACGTTAATCTTCTTCTTATTTCAGTCCAACACAACGACAAAGGTTGATTTGGCCGTGCATGGCG
TCCAAACATCCTTAACCAAGGCGATGGATACGAAGCATTTAAGATTACATCACGTTGGCACTGAAAAACCTACCCGCATA
ATCAAACAGCATGATTATGCGGGCGTTTTAACGCAACATGGCAATCAGCTTACGTTAACGCTTGCCAACACCGATCAGGG
ACAAAGCACGCTGTTGAAGCAAACATTACAGGCTGCCACCGTTAAGTTAAGACTAAAAGCTGCGGCCACCAGCCTTAAAA
CACAAGCGATTGCCTTAAATAAACTGACGGACGCGTTACAACAAGCCACGCACGGTGCGGTACAAGTCCCCATCCCGCAA
CAACCCAAGCAGACCAATTATCGCATGACAACCCACTATCGCTACGGCTCGTCTGAATCCACTTACTTTGATACTTTGTT
ACCGATTCTTATTGGCTTTATCGTCTTCTTCTTTGTCTTTTTTATTTCCGGCATTGCCTTACTGCGCGAACGGACAACCG
GAACGCTTTATCGCTTGCTGGCGACTCCGATTCGTCGCGGTGAAATCATCAGTGGATACCTACTTGGTTACGGGATCTTT
GCGGTCATTCAAACGGTTTTGATTGTCGGTTATGCCTTGGTGGTCTTTAAGATCCAAATTCTTGGAAGCATTCCGGCCAT
TTTTCTGATCAATTTGTTGCTGGCATCAACAGCCCTTGCGCTCGGCTTGCTCATTTCAACCTTTGCCAACAGTGAGTTTC
AGATGTTGCAGTTTATTCCTATTATTGTGATCCCCCAGATTTTCTTCACCGGATTGATTCCTGTCAATCAGATGCTTGGA
TGGCTGCAACCCATTGCGCATTTGATGCCACTTTATTATGGTGCCAATGCTTTAACCGGAATTATTACCAAAGGCCAATC
ACTAGCAGTTTTATACCCTGATGTCATTGCATTGGTAGGCTTTTTCCTGCTATTTTTAGACTTGAATCTTTTGACAATGC
GCAAATATCGTCAAGTTTGA

Protein sequence :
MRIEALMIRIFKEMLRDKRTLALMFIAPLFIMTLIFFLFQSNTTTKVDLAVHGVQTSLTKAMDTKHLRLHHVGTEKPTRI
IKQHDYAGVLTQHGNQLTLTLANTDQGQSTLLKQTLQAATVKLRLKAAATSLKTQAIALNKLTDALQQATHGAVQVPIPQ
QPKQTNYRMTTHYRYGSSESTYFDTLLPILIGFIVFFFVFFISGIALLRERTTGTLYRLLATPIRRGEIISGYLLGYGIF
AVIQTVLIVGYALVVFKIQILGSIPAIFLINLLLASTALALGLLISTFANSEFQMLQFIPIIVIPQIFFTGLIPVNQMLG
WLQPIAHLMPLYYGANALTGIITKGQSLAVLYPDVIALVGFFLLFLDLNLLTMRKYRQV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0095 NP_763650.1 hypothetical protein Not tested SCCpbp4 Protein 3e-47 42
SH0082 YP_251997.1 hypothetical protein Not tested SCCmec Protein 3e-47 42
SH2614 YP_254529.1 hypothetical protein Not tested ¥ðSh2 Protein 2e-47 41