Gene Information

Name : LRHK_951 (LRHK_951)
Accession : YP_005872596.1
Strain : Lactobacillus rhamnosus ATCC 8530
Genome accession: NC_017491
Putative virulence/resistance : Resistance
Product : ABC transporter family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 904391 - 905056 bp
Length : 666 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAATTTTAACGGCACGCCAATTGACCAAGCAATATGCTGGTGAAGCGCATCCGGCACTGGATCATGCCAATTTGAC
GATTGAACAAGGCGAGTTTGTTGCCATAGTGGGGCCGAGTGGTTCAGGAAAGTCAACCTTGCTTCATTTGTTAGGCGGGA
TTGATCAGCCAACCAGTGGGGAGGTCCGGTTATATGACACGGATATCTACGCACTGAATCAAACGCAACTGGCGATTTTT
CGACGTCGGCAAGTCGGCTTGATTTATCAGTTTTACAACTTGATTCCGAACTTGACGGTGGCTGAGAATATCACATTGCC
AGCGGATTTGGATGGACGGTCAATTAAAGAAGCCGTTTTGACGGAGATGTTAACAACCTTGGGCCTTGTCGAAAAGGCAT
CTGCTTTGCCTAATCAGCTTTCAGGCGGGCAGCAGCAACGGGTGGCAATTGGACGGGCGTTAATCAATCATCCCGCGGTT
ATTTTGGCCGATGAACCTACAGGCAATCTTGATCGCCGGAATTCACAGGATGTGATGACGCTACTACGACAAGCCAATAT
TAAGCAGGGGCAGACACTGGTCGTGATCACCCATGATCCAGACATTGCCAGTCAAGCTGATCGTATTGTCCGCATTGACG
ATGGGGTCGTGAGCGGGGGGCGGTGA

Protein sequence : 
MAILTARQLTKQYAGEAHPALDHANLTIEQGEFVAIVGPSGSGKSTLLHLLGGIDQPTSGEVRLYDTDIYALNQTQLAIF
RRRQVGLIYQFYNLIPNLTVAENITLPADLDGRSIKEAVLTEMLTTLGLVEKASALPNQLSGGQQQRVAIGRALINHPAV
ILADEPTGNLDRRNSQDVMTLLRQANIKQGQTLVVITHDPDIASQADRIVRIDDGVVSGGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-34 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-35 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRHK_951 YP_005872596.1 ABC transporter family protein CP001581.1.gene598.p Protein 1e-54 55
LRHK_951 YP_005872596.1 ABC transporter family protein CP001581.1.gene798.p Protein 1e-50 51
LRHK_951 YP_005872596.1 ABC transporter family protein NC_008702.1.4606598. Protein 5e-35 48
LRHK_951 YP_005872596.1 ABC transporter family protein NC_012469.1.7686878. Protein 8e-38 42