Gene Information

Name : LRHK_3003 (LRHK_3003)
Accession : YP_005874568.1
Strain : Lactobacillus rhamnosus ATCC 8530
Genome accession: NC_017491
Putative virulence/resistance : Resistance
Product : ABC transporter family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2925173 - 2925862 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
ATGATTGACCTTCAAAATGTCAATAAGAGTTACGGCCAAGGTGATACCGCTTTTCACGTTCTCAAGGATATTAATCTGCA
CATCGACCAAGGCGAGTTTGTCGCGATCATGGGGCCTTCCGGATCCGGAAAGACAACGCTGATCAACATCATTGGATTTC
TTGATACGGCATTTGAGGGCAAATATCTTTTTGAAGACGAAAATGTCGCCAACTTCAATGCCACAACCGCCTCACATATG
CGCAATCGTAATGTCGGCTTTGTTTTTCAAAACTTCAGTCTGATCCATAATCTGAATATATTTGAAAATGTCCTCATTCC
TCTAAGTTATGGTGGTAAGCGCCGATCAGAAGTTAAAGGACGAATCGCCGAGCTGCTCGATTCGGTTGGCCTTCCGGGAG
TCGAAGATAAGCTGCCGCGCAATTTATCCGGTGGCCAGCAGCAACGTGTGGCCATTGCCCGCGCGCTGGCGAATTCGCCG
CAATTTCTGATTGCCGATGAACCGACCGGCGCTTTAGACAGCCATACTTCAGAAGATATTATGCAACTTTTCAAAAAACT
GCACCGACAAGGCGGTACGATCATTATGGTCACCCATGATGAACATGTGGCGCTGGAAAGTGACCGTATGATCAAGGTCC
TGGATGGCCAGATCATCAGTGACACGGAGGTGGCCCATGCGACTAACTGA

Protein sequence : 
MIDLQNVNKSYGQGDTAFHVLKDINLHIDQGEFVAIMGPSGSGKTTLINIIGFLDTAFEGKYLFEDENVANFNATTASHM
RNRNVGFVFQNFSLIHNLNIFENVLIPLSYGGKRRSEVKGRIAELLDSVGLPGVEDKLPRNLSGGQQQRVAIARALANSP
QFLIADEPTGALDSHTSEDIMQLFKKLHRQGGTIIMVTHDEHVALESDRMIKVLDGQIISDTEVAHATN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-36 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-36 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-36 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRHK_3003 YP_005874568.1 ABC transporter family protein NC_012469.1.7686878. Protein 8e-49 51
LRHK_3003 YP_005874568.1 ABC transporter family protein CP001581.1.gene798.p Protein 6e-39 43
LRHK_3003 YP_005874568.1 ABC transporter family protein NC_008702.1.4606598. Protein 9e-38 42