Gene Information

Name : metC (LRHK_2613)
Accession : YP_005874188.1
Strain : Lactobacillus rhamnosus ATCC 8530
Genome accession: NC_017491
Putative virulence/resistance : Resistance
Product : cystathionine beta-lyase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2550835 - 2552019 bp
Length : 1185 bp
Strand : -
Note : -

DNA sequence :
ATGGAATTTGATACAAAATTAATTCACGGTGGCATCAGCGAAGACAAATACACAGGCGCAACATCAGTCCCAATCTATAT
GGCATCCACCTTTCATCAACAGAAGATTGGTGAAAACGAATACGAATATTCCCGTTCGGGTAACCCCACCCGGGAAGCGG
TTGAAAAATTAATTGCCGATTTGGAAGACGGCAGCGCTGGCTTTGCGTTTGCTTCCGGTTCGGCGGCCATCGATACGGTG
TTCTCACTATTTTCTGCCGGCGATCATTTCGTCATTGGCAATGACGTCTACGGTGGGACTTTCCGCTTGATTGACGCGGT
TTTAAAACGATTCGGCATGACGTTTACCGTCGTTGATACCCGCGACCTGCAAGCCGTTAAAGCCGCCATCACCCCCGCCA
CAAAGGCCATTTATTTGGAAACCCCGACCAATCCACTGCTGCGGGTAACCGATATCGCTGCCGTCGCTAAAATTGCTAAG
GACCGTGGTATTTTAAGCATTATCGACAACACTTTCTCATCGCCATACGTTCAACGGCCCTTAGACCTTGGCGTGGATAT
CGTTTTGCACAGTGCTTCTAAGTACCTTGGTGGCCATAGTGATCTGGTTGCCGGCCTGGTAGTCACTAAGGATCAAGCCC
TTGGCGAAAAAATTGGGTACCTGCAAAATGCCATCGGCGGCATCTTGGCACCCCAGGAGAGCTGGTTATTGCAACGGGGA
ATGAAGACCCTCTCACTTAGAATGCGGGCTCATTTGGCCAATGCGGAAGCAATCTTCAATTATTTGAAAAATCAGCCGCT
GGTCAGCAAAATTTACTATCCTGGCGATCCTAACAATCCGGATTACGAAGTTGCTCAGAAACAGATGCACGGATTTGGCG
CAATGATCTCGTTCGAATTACAAGCCGGTCTGGATCCCAAACAATTTGTCGAACAACTCCAAGTTATCACCCTGGCCGAA
AGTCTGGGCGCTCTTGAAAGTCTCATCGAAATTCCAGCCTTGATGACTCACGGTTCAATCCCCCATGACATCCGGCTTAA
AAACGGCATCAAGGACGAACTAATCCGCCTGTCAGTCGGCGTTGAGGATCAAAAAGACCTATTAGCCGACCTGGAACGTG
GATTCGATCAACTAAAGGGGAGCCATCAAGATGTTTCAAACAGCAGGGTCCATTCTCAAGCGTGA

Protein sequence :
MEFDTKLIHGGISEDKYTGATSVPIYMASTFHQQKIGENEYEYSRSGNPTREAVEKLIADLEDGSAGFAFASGSAAIDTV
FSLFSAGDHFVIGNDVYGGTFRLIDAVLKRFGMTFTVVDTRDLQAVKAAITPATKAIYLETPTNPLLRVTDIAAVAKIAK
DRGILSIIDNTFSSPYVQRPLDLGVDIVLHSASKYLGGHSDLVAGLVVTKDQALGEKIGYLQNAIGGILAPQESWLLQRG
MKTLSLRMRAHLANAEAIFNYLKNQPLVSKIYYPGDPNNPDYEVAQKQMHGFGAMISFELQAGLDPKQFVEQLQVITLAE
SLGALESLIEIPALMTHGSIPHDIRLKNGIKDELIRLSVGVEDQKDLLADLERGFDQLKGSHQDVSNSRVHSQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-86 52
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-87 52
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 3e-67 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
metC YP_005874188.1 cystathionine beta-lyase BAC0207 Protein 2e-65 44