Gene Information

Name : pdp (LRHK_2201)
Accession : YP_005873801.1
Strain : Lactobacillus rhamnosus ATCC 8530
Genome accession: NC_017491
Putative virulence/resistance : Unknown
Product : pyrimidine-nucleoside phosphorylase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2160433 - 2161737 bp
Length : 1305 bp
Strand : -
Note : -

DNA sequence :
ATGCGCATGGTCGACTTGATTACAAAGAAACGCGATCACGGGGAATTGACCGATGATGAATTAACCTGGATGATTCAGCA
GTATACCGCGGAAAAGATCCCGGATTACCAAATGAGTGCGTTTTTGATGGCAGTCTATTTTAACGGCATGAGTGCGGCTG
AACGCGATCACTTTGCGTTTGCAATGCTGCATTCCGGTGACGTCCTTGATTTAAGCGATATTCCCGGCATCAAGGTTGAC
AAGCACAGTACTGGGGGCGTGGGTGATAAAATCAGTATTCCGCTGGCACCTTTAGTAGCTTCTCTGGGTGTTCCCGTACC
CATGATTTCAGGCCGTGGCCTTGGCCATACCGGCGGAACACTGGATAAGCTAGAAAGTATTCCGGGCTTTAATGTTAACG
AAACTGAAGCCCAATTCAAACACCAAGTGCAAACACTCCATCAAGCCATTGTGAGTGCCAGTCGCGATGTTGCCCCAGCG
GATCGGCGAATCTATGCATTGCGTGATGTGACCGGGACAGTGGAATCGATACCATTAATTGCGGGCTCGATTATGAGTAA
GAAACTGGCGAGTGGGACCGATGCCTTGGTTTTCGATGTCAAAGTTGGCAATGGTGCGTTTATGAAGACTTCAGAAGATG
CGCGTGCTTTAGCTAAAGCCTTGGTTAGCATCAGTCAGGCTGCCGGCGTCAAAAGTGTTGCTTTGCTAACTGATATGAAT
CAACCGCTGGGCATTACAATCGGTAACAGCTTGGAAATCGCCGAATCAATCGCTATTTTAAAAAATCGCGGGCCACGGGA
TGTCCACGACTTAACGGTTGCATTAGCCGCACAGATGTTGGTCTTAGGCAAAAAAGCACCAAGTCTGGAAATTGCCACCG
GGTTAGCAGAAGATGCCTTGCGTGATGGCCGAGCTTTGAACGCGTTTAAACAGCTCATTCAAGCTCAAGGCGGTGATCCG
GCGGTGGTTGATGATCCGCGGAAGTTACCGCAAGCAGCATATCGAATTCCGGTTAAAGCCGAGCAAAGCGGTATTGTCAC
TGCGATTGATACGAATGCCCTAGGCGTGGCGGCAATGCAACTGGGCGGCGGCCGCGCTCAAAAAGGAGACACGTTGGACT
TGGCAGTCGGCTTAGTTCTACACAAAAAACTGGGAACGCCGGTGACTAAAGGCGATACGCTGGTCATGCTGCACGCTAAC
GATCAACATGTGGATGCGATTGTAGAGTTGGTGCGCCAAGCTTACCATATCGGCACAACCGCTCCAAAAAAGTTGCCGTT
AATTCATGAAGTGATTCGACCGTAA

Protein sequence :
MRMVDLITKKRDHGELTDDELTWMIQQYTAEKIPDYQMSAFLMAVYFNGMSAAERDHFAFAMLHSGDVLDLSDIPGIKVD
KHSTGGVGDKISIPLAPLVASLGVPVPMISGRGLGHTGGTLDKLESIPGFNVNETEAQFKHQVQTLHQAIVSASRDVAPA
DRRIYALRDVTGTVESIPLIAGSIMSKKLASGTDALVFDVKVGNGAFMKTSEDARALAKALVSISQAAGVKSVALLTDMN
QPLGITIGNSLEIAESIAILKNRGPRDVHDLTVALAAQMLVLGKKAPSLEIATGLAEDALRDGRALNAFKQLIQAQGGDP
AVVDDPRKLPQAAYRIPVKAEQSGIVTAIDTNALGVAAMQLGGGRAQKGDTLDLAVGLVLHKKLGTPVTKGDTLVMLHAN
DQHVDAIVELVRQAYHIGTTAPKKLPLIHEVIRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
deoA YP_005163381.1 Thymidine phosphorylase Not tested Not named Protein 8e-88 49