Gene Information

Name : LRHK_2031 (LRHK_2031)
Accession : YP_005873635.1
Strain : Lactobacillus rhamnosus ATCC 8530
Genome accession: NC_017491
Putative virulence/resistance : Virulence
Product : AAA ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1984139 - 1986289 bp
Length : 2151 bp
Strand : -
Note : -

DNA sequence :
ATGGCAAACTTTAACGATCCGTTTTTCAATCATGACATGGACGATGTATTCAATCAGATGCTTCAAGGAATGGGTAAAGG
CGAGTCAGCCCGCTATGTGGTGAATGGCCACGAAATGACGCCGGATGAATTTGCGCAGTATCGGGCGACTGGTCAGCTGC
CAAAGCAAGGCGATGAAATCCCGGTTGAAACGACTGGCGAACAAGCGGTTAAGAAAGGCGGTATTCTTGAAAAGCTTGGC
CGCAACCTGACGCAAGAAGCCAAGGATGGTCTGCTTGATCCGGTGATTGGCCGTGATCACGAAATTCAGGAAACTGCCGA
AATTTTGAGTCGACGGACGAAGAACAATCCAATTTTGGTCGGTGACGCCGGTGTCGGCAAGACCGCGGTGGTTGAAGGCT
TGGCACAAGCGATTGTGAAGGGCAATGTACCTGAATCAATTAAAGACAAGCAGATTTGGTCGATTGATCTGTCGAATCTG
GAAGCAGGCACGCAATATCGTGGCAGCTTTGAAGAAAAGATTCAGAATCTGATCAAAGAAGTGAAAGCTGCTGGCAATGT
GATTCTGTTCTTTGATGAAATCCATCAAATTCTTGGCGCCGGTGCAACTGGTGGCGAAGAGTCTGGCGGTAAGGGCCTCG
CGGATATTATCAAGCCAGCCTTGTCGCGTGGTGAAATCACTGTGATCGGTGCGACGACGCAAGATGAATATCGCAATACC
ATTATGAAGGACAGCGCCTTGGCACGTCGGTTTAACGATGTCACAATCAATGAACCGAGCGCTGCCGATACGGTCAAGAT
TCTGGAAGGCGTCAAGAAGCTTTACGAACAGCATCATCACGTTCAGTTACCGGAAAATGTTTTGAAGGCGGCGGTGGATT
ATAGTATTCAATATATTCCACAGCGCTCCTTGCCGGATAAAGCAATTGACCTCATTGATATGACCGCGGCACACTTAGCA
AGCAAGCACCCGATTGTTGACAAGGTGGAACTGGAAAAGCAAATCAAGGATCTCAACGCGCAAAAGGATGCAGCGGCAAA
AGCTGAAGATTTTGAAAAAGCTGCCAACCTTAAGAAGGAGATTGCCGACAAGCAACATCAGCTTGAAGGAACGAACAACG
AGAAGCCTGTCGTCGCAACCCCGAATGATGTCGCTGCAGCTGTTGAACGTTTGACTGGCATTCCGGTTTCCAAGCTGGGT
GCATCCGATATTGAACGGCTGAAAGGCATTGGTAAGCGCCTGAAGGGTAAGGTAATTGGCCAAGACGAAGCCGTTGATAT
GGTTGCCCGCGCTATTCGCCGGAACCGGGCTGGCTTTGATGAAGGTAACCGCCCAATTGGCAGCTTCCTGTTTGTTGGAC
CAACCGGTGTCGGGAAGACCGAACTGGCTAAGCAGTTGGCGTTAGATCTTTTCGGCAGTAAAGATGCGATCATCCGGTTA
GATATGTCCGAATATAGCGATCGTACAGCGGTATCCAAACTGATTGGCACCAGCGCAGGCTATGTTGGATACAATGACAA
CAAGAACACGTTGACAGAGCAAGTACGGCGCAATCCTTATTCCATCGTCTTACTCGATGAAATCGAAAAGGCTGATCCAC
AAGTCTTGACGCTGTTGCTGCAAGTCTTAGACGATGGGCGGTTAACAGATGGCCAAGGTAATGTCGTTGACTTTAAGAAC
ACCGTCATCATTGCCACTTCCAATGCTGGGTTTGGCAATGAAGCATTAACTGGCGAGAAGGAGAAGGACGAAGATTTGAT
GAAGCGGTTGGCGCCTTACTTCCGTCCTGAATTCCTGAACCGATTTAACGGGATTGTTGAATTCAGTCACTTAACCAAGA
ATGATTTGGGTAAGATCGTTGACTTGATGCTTGAAGACGTCAACAAGACTTTGGCGAAGAAAGGCATCACACTTACCGTG
ACGGATGCAGCCAAGGATTGGTTGATTGCCCAAGGTTACGATGAAGCGATGGGTGCACGACCATTACGGCGGGTCATTGA
ACGCAACATCCGCGATAAGGTTACCGACTTCTACCTGGATCACCTGAAGGCTAAGAAGTTACAGGCTGACTTGATTGATG
GTGCGATTATCGTCAGTGAAGTGCAACCAGCAAGCGACAAGCCAAAGAAAGAAGCTAGCGGTGCGAAGTAA

Protein sequence :
MANFNDPFFNHDMDDVFNQMLQGMGKGESARYVVNGHEMTPDEFAQYRATGQLPKQGDEIPVETTGEQAVKKGGILEKLG
RNLTQEAKDGLLDPVIGRDHEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQAIVKGNVPESIKDKQIWSIDLSNL
EAGTQYRGSFEEKIQNLIKEVKAAGNVILFFDEIHQILGAGATGGEESGGKGLADIIKPALSRGEITVIGATTQDEYRNT
IMKDSALARRFNDVTINEPSAADTVKILEGVKKLYEQHHHVQLPENVLKAAVDYSIQYIPQRSLPDKAIDLIDMTAAHLA
SKHPIVDKVELEKQIKDLNAQKDAAAKAEDFEKAANLKKEIADKQHQLEGTNNEKPVVATPNDVAAAVERLTGIPVSKLG
ASDIERLKGIGKRLKGKVIGQDEAVDMVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKDAIIRL
DMSEYSDRTAVSKLIGTSAGYVGYNDNKNTLTEQVRRNPYSIVLLDEIEKADPQVLTLLLQVLDDGRLTDGQGNVVDFKN
TVIIATSNAGFGNEALTGEKEKDEDLMKRLAPYFRPEFLNRFNGIVEFSHLTKNDLGKIVDLMLEDVNKTLAKKGITLTV
TDAAKDWLIAQGYDEAMGARPLRRVIERNIRDKVTDFYLDHLKAKKLQADLIDGAIIVSEVQPASDKPKKEASGAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 4e-116 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRHK_2031 YP_005873635.1 AAA ATPase VFG0080 Protein 4e-126 50
LRHK_2031 YP_005873635.1 AAA ATPase VFG0079 Protein 2e-115 46