Gene Information

Name : LRHK_1943 (LRHK_1943)
Accession : YP_005873548.1
Strain : Lactobacillus rhamnosus ATCC 8530
Genome accession: NC_017491
Putative virulence/resistance : Virulence
Product : helix-turn-helix family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1884668 - 1884871 bp
Length : 204 bp
Strand : +
Note : -

DNA sequence :
ATGAATCGTGTACGTGAATTTCGCCGTGAAAAGAAACTCTCGCAGCTTGCTTTGGCAGAAAAGATCGGCGTTGCCCGACA
AACGATCAACCTCATCGAAAATGGGAAATACAATCCTTCTTTGGAACTTTGTCTCAAACTGTCGTGGACACTAGGCACGG
ATCTCAACACATTGTTTTGGAGGGAAAAGAATGAAGAACTTTGA

Protein sequence :
MNRVREFRREKKLSQLALAEKIGVARQTINLIENGKYNPSLELCLKLSWTLGTDLNTLFWREKNEEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 4e-10 50
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 3e-07 49
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 2e-07 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRHK_1943 YP_005873548.1 helix-turn-helix family protein VFG2168 Protein 8e-08 49
LRHK_1943 YP_005873548.1 helix-turn-helix family protein VFG2175 Protein 8e-08 49