|
Name : LCGL_0940 (LCGL_0940) Accession : YP_005870684.1 Strain : Lactococcus garvieae Lg2 Genome accession: NC_017490 Putative virulence/resistance : Unknown Product : chaperone ClpB Function : - COG functional category : - COG ID : - EC number : - Position : 961646 - 964249 bp Length : 2604 bp Strand : + Note : - DNA sequence : ATGGACATCGAAAAAATGACAACAAGTATGCAAAAATCGCTTTATGAAGCGCAACAAATTGCGCAGACTCGCCATCATCA AGCGATTGAAATTCCACATTTATGGCGAATATTTGTACAACCGAACAGTTTTGCCTTTAATTTTTACAAAGATTCAGAAA TTAACATTGAAGAATTTACGAAAGTTATTGAAAAAGAAATAGACAAAATTTCTTCTGTTGAGGGAAGTAATATTACCTAT GGTCAAAATATTAGTGCAGATCTTTTTAATCTGTTTAATGCAGCAGATAAGATTGCCAAAGATCAGGGTGATGAATATCT CTCCACTGAAATTGTACTCTTGGCCCTTTTTGAGTTAAAGAAAAATCCTTTAACAGAATATCTGGTGCGCCAGGGAATGA ATAAAGAAAAAACAAAATTAGCAATTGAAAACCTACGAGGAGGTGATAAAGTGACAAATCAAAATGCTGAAGATACATAT AAAGCACTTGAAAAATACGGTGTTGACCTTGTAGCTCAAGTGAAATCAGGAAAACAAGATCCGGTAATCGGCCGTGATGA AGAAATTCGTGACATCATTCGTGTCTTATCACGTAAAACAAAAAATAACCCCGTTCTGATTGGTGAACCTGGTGTGGGTA AAACAGCCATTGTTGAAGGACTTGCGCAACGTATTGTCCGTAAAGATGTGCCTGAAAATCTAAAAGATAAAACGGTATTC TCTTTAGACATGGGGGCACTTATTGCAGGGGCTAAATACCGTGGGGAGTTTGAAGAACGTCTGAAAGCTGTACTCAATGA AGTTAAAAAGTCTGACGGACAAATCATTCTCTTTATTGATGAGTTACACACGATCGTCGGTGCGGGTAAGACCGAAGGTT CAATGGATGCTGGTAATCTTTTGAAACCGATGCTTGCACGTGGTGAATTGCATTTAATTGGTGCAACAACTTTGGACGAG TACCGTAAATATATGGAAACAGACAAAGCTTTGGAACGTCGTTTCCAAAAAGTTCTAGTAACTGAACCAACAGTTGAAGA TACTATTTCCATTCTGCGTGGTTTGAAAGAACGTTTTGAAATTCACCATGGTGTAACAATCCACGATAACGCATTGGTGG CAGCAGCAACACTTTCTGATCGTTACATTACAGATCGTTTCTTGCCAGATAAAGCGATTGATTTGGTCGATGAGGCCAGC GCCACAATTCGTGTTGAAATGAATTCCTTGCCAACAGAACTCGACCAAGCAAACCGTCGCTTGATGCAGTTGGAAATCGA AGAAGCAGCCCTCAAAAAAGAACGTGATGATGCTTCTAAGAAACGTTTAAATATCATTCGTGAAGAAATTGCAGAACTTC GTGAAGAAAACAATCAACTTAAAGCCCAATGGGAAGCTGAAAAGAAAGAAGTGGGCAATATTTCTGATAAAAGGAATGAA TTGGAACGTGCACGCCATGAATTAGAAGAAGCCCAAAATGAAGGTGACTTTGAAAAAGCTGCAGCCTTACGTTACGGTAA AATTCCAGAAATTGAACAAGCGCTGAAAGAACTCGAAAGTAAAGCAAAATCAGATGATCTCAGCCTTGTTCAAGAATCAG TCACTGAGGAACAAATTGCCGAAGTTGTTGGTCGGATGACAGGTATTCCTGTAACAAAACTGGTAGAAGGTGAACGTGAA AAACTCCTTCATTTACCAGAAACACTTCATCAACGTGTAGTAGGGCAAGATGAAGCGGTCGAAGCTGTGTCTGATGCTAT TATCCGTGCTCGTGCAGGTATCCAAGACCCCAACCGTCCTTTAGGTTCCTTCCTTTTCTTAGGTCCTACAGGTGTTGGTA AGACAGAGTTAGCTAAAGCATTGGCTGAAAATCTGTTTGACTCCGAAGAACATATGGTTCGTATTGACATGAGTGAATAC ATGGAAAAACATAGTGTATCTCGTCTTGTCGGAGCTCCTCCAGGATATGTTGGTTATGATGAAGGAGGTCAACTGACTGA AGCTGTGCGTCGTAACCCATATACGATTATTTTGTTGGATGAAATTGAAAAAGCCCACCCAGATGTCTTCAATATCTTGT TGCAAGTTTTGGATGATGGTCGTTTGACCGATTCGAAAGGCGTTTTAGTCGACTTCAAGAATACTGTTTTGATTATGACT TCAAATGTTGGTTCACAATATTTGCTGGATAATGTCGATGATCAAGGTGAAATATCTGAAGAAACAACTGAGGAAGTGAT GAAACAATTGCGGATGCATTTCAAACCAGAATTCCTCAACCGTATAGATGATACTATTCTCTTCAAACCATTGTCATTGA ATAATATTAAAAACATTATTGTGAAGATGACGGGGCAATTGACACAACGTCTTGAAGAAATGTCTGTAGAACTAGAACTC AGTGAAGAAGTCAAAGTATGGATTGCAGAAAATGCTTATGAACCAGCTTATGGTGCACGTCCATTAAAACGTTATTTGAC AAAAGTTATTGAAAATCCACTTGCTAAATTGATTATTGCAGGAAAGATTCCACCAAAAACTAAAGTTCTTGTCAAACTCG TCGACAATAAAATTGACTTTGATATCTTACCCATTGAAGAATAA Protein sequence : MDIEKMTTSMQKSLYEAQQIAQTRHHQAIEIPHLWRIFVQPNSFAFNFYKDSEINIEEFTKVIEKEIDKISSVEGSNITY GQNISADLFNLFNAADKIAKDQGDEYLSTEIVLLALFELKKNPLTEYLVRQGMNKEKTKLAIENLRGGDKVTNQNAEDTY KALEKYGVDLVAQVKSGKQDPVIGRDEEIRDIIRVLSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTVF SLDMGALIAGAKYRGEFEERLKAVLNEVKKSDGQIILFIDELHTIVGAGKTEGSMDAGNLLKPMLARGELHLIGATTLDE YRKYMETDKALERRFQKVLVTEPTVEDTISILRGLKERFEIHHGVTIHDNALVAAATLSDRYITDRFLPDKAIDLVDEAS ATIRVEMNSLPTELDQANRRLMQLEIEEAALKKERDDASKKRLNIIREEIAELREENNQLKAQWEAEKKEVGNISDKRNE LERARHELEEAQNEGDFEKAAALRYGKIPEIEQALKELESKAKSDDLSLVQESVTEEQIAEVVGRMTGIPVTKLVEGERE KLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEY MEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPDVFNILLQVLDDGRLTDSKGVLVDFKNTVLIMT SNVGSQYLLDNVDDQGEISEETTEEVMKQLRMHFKPEFLNRIDDTILFKPLSLNNIKNIIVKMTGQLTQRLEEMSVELEL SEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIAGKIPPKTKVLVKLVDNKIDFDILPIEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-99 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-99 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-99 | 41 |
