Gene Information

Name : yogM (CVCAS_1357)
Accession : YP_005868730.1
Strain : Lactococcus lactis CV56
Genome accession: NC_017486
Putative virulence/resistance : Virulence
Product : ParBc superfamily nuclease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1411230 - 1411772 bp
Length : 543 bp
Strand : -
Note : -

DNA sequence :
ATGGGAGACATTTTTATAAGTCCAGCTTATGATATCAGGCGAGTACCAATTGAGAAGATTAGAGCAAATGCTTATAATCC
AAACCGAACAGCACCTCCTGAATTTCAACTACTTGAACGGTCGATTTTGGAAGATGGTTATACAATGCCTATCGTTTGTT
ATTACGATAAAGAACAGGATTTTTATGAAATTGTGGATGGTTTTCATCGTTATCTTGTTATGAAAAACTCTGAAGAAATT
GCTAAACGAGAAGGCAATTGTTTACCTGTTTCGATTATTGATCGTCCACTTGAAGATAGAATTGCTAGTACCATTCGACA
TAATCGTGCTAGAGGCACACATTCAATCGAATTGATGACGGAAATTGTTCAACAATTGGTAGAATCGGGGTTGAGTGACC
AGTGGATTATGAAACATATTGGAATGGATAAAGAAGAGTTGCTTCGTTTAAAACAGTTGAGTGGTTTGGCTTCCCTTTTC
CAAAATCAGGAATTTTCTCGGGCTTGGAATTGGGAAGAGGATGAAGAAATCAGTGAAGAGTGA

Protein sequence :
MGDIFISPAYDIRRVPIEKIRANAYNPNRTAPPEFQLLERSILEDGYTMPIVCYYDKEQDFYEIVDGFHRYLVMKNSEEI
AKREGNCLPVSIIDRPLEDRIASTIRHNRARGTHSIELMTEIVQQLVESGLSDQWIMKHIGMDKEELLRLKQLSGLASLF
QNQEFSRAWNWEEDEEISEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 8e-51 63
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 3e-40 56
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 4e-40 56
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 8e-28 48
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 8e-28 48
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 3e-25 46
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 5e-25 46
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 5e-25 46
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 3e-25 46
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 8e-26 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yogM YP_005868730.1 ParBc superfamily nuclease VFG1505 Protein 3e-26 46