Gene Information

Name : LRHM_2812 (LRHM_2812)
Accession : YP_005867304.1
Strain : Lactobacillus rhamnosus GG
Genome accession: NC_017482
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATP-binding component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2973871 - 2974560 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
ATGATTGACCTTCAAAATGTCAATAAGAGCTACGGCCAAGGTGATACCGCTTTTCACGTTCTCAAGGACATTAATCTGCA
CATCGACCAAGGCGAGTTTGTCGCGATCATGGGGCCTTCCGGATCCGGAAAGACGACACTGATCAACATCATTGGATTTC
TTGATACGGCATTTGAGGGCAAATATCTTTTTGAAGACGAAAATGTCGCCAACTTCAATGCCACAACCGCTTCACATATG
CGCAATCGTAATGTCGGCTTTGTTTTCCAAAACTTCAGTCTGATCCATAATCTGAATATATTTGAAAATGTCCTCATTCC
TCTAAGTTATGGTGGTAAGCGCCGATCAGAGGTTAAAGGACGAATCGCCGAGCTGCTCGATTCGGTTGGCCTTCCGGGAG
TCGAAGATAAGCTGCCGCGCAATTTATCCGGTGGCCAGCAGCAACGTGTGGCCATTGCCCGAGCGCTGGCGAATTCGCCG
CAATTTCTGATTGCCGATGAACCGACCGGCGCTTTAGACAGCCATACTTCAGAAGATATTATGCAACTTTTCAAAAAACT
GCACCGACAAGGCGGTACGATCATTATGGTCACCCATGATGAACATGTGGCGCTGGAAAGTGACCGTATGATCAAGGTCC
TGGATGGCCAGATCATCAGTGACACGGAGGTGGCCCATGCGACTAACTGA

Protein sequence : 
MIDLQNVNKSYGQGDTAFHVLKDINLHIDQGEFVAIMGPSGSGKTTLINIIGFLDTAFEGKYLFEDENVANFNATTASHM
RNRNVGFVFQNFSLIHNLNIFENVLIPLSYGGKRRSEVKGRIAELLDSVGLPGVEDKLPRNLSGGQQQRVAIARALANSP
QFLIADEPTGALDSHTSEDIMQLFKKLHRQGGTIIMVTHDEHVALESDRMIKVLDGQIISDTEVAHATN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-36 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-36 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-36 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRHM_2812 YP_005867304.1 antimicrobial peptide ABC transporter ATP-binding component NC_012469.1.7686878. Protein 8e-49 51
LRHM_2812 YP_005867304.1 antimicrobial peptide ABC transporter ATP-binding component CP001581.1.gene798.p Protein 6e-39 43
LRHM_2812 YP_005867304.1 antimicrobial peptide ABC transporter ATP-binding component NC_008702.1.4606598. Protein 9e-38 42