Gene Information

Name : LRHM_2330 (LRHM_2330)
Accession : YP_005866822.1
Strain : Lactobacillus rhamnosus GG
Genome accession: NC_017482
Putative virulence/resistance : Virulence
Product : manganese ABC transporter substrate binding component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2487540 - 2488481 bp
Length : 942 bp
Strand : -
Note : -

DNA sequence :
ATGAAGAAGATTTTAATTACTGTAGGTGCTTTAATTGTGATGGTCGGTGGTGTCTTTTGGTTCATTAACAGTCGGAGTAC
GGCTCAAAAAGATTCAGCAAGCACGAATCAAACGTTGCGGGTGGTCACAACCAATTCGATTTTGGAGGATATGGTTCAAA
ATGTCGGCGGCGAGCGGATCAAGCTGTACAGTATTGTTAAACGCGGCACGGATCCGCATGAGTATGAACCGCGCCCAACC
GATGTGGCGGCAACCAGTGAAGCCGATGTTGTGTTTCATAATGGTTTGAACCTTGAAACCGGTGGTAATGGCTGGTTTAA
GAAGTTGGTTAAGACGTCGCACAAGGAATTTGATAAGGATGTTTTTGCCGCAAGTAAAGGTGTGACCGCGCAACACTTGA
CGACCAACACCAAAGAACAGGATCCGCACGCTTGGCTGGACTTAGCTAATGGCATCCAGTATGTTAAGACGATTACCAAG
GTGCTCAAACAAAAAGATGCCAAAAACGCTGCTTATTATCAGAAGAATAGCGATCGATACGTTGCCAAGTTGCAAAAACT
GCATGAAACCGCGCAGTCACGCTTCCTCGATATTCCGGAAAAGCAACGCGTGTTAGTGACGTCAGAAGGGGCCTTTAAGT
ACTTTTCCAAGGCTTATCATGTGACCCCGGCATACATTTGGGAAATCAACACTGAATCTCAAGGAACACCAGAACAGATG
CAGACGGTTTTAGCTAAGATTCGTGCATCCGAAGTGAAACATCTATTCGTGGAAACCTCGGTCTCACCGAAGTCCATGAA
TAAAGTGGCCAAAGAGACCGGGTTGTCGATTTACTCGAAGATTTTCACGGACTCGCTGGCAGCTAAGGGGACTCAAGGCG
ATACGTATTATACGATGATGAAGTGGAACCTTGATAAGATTCACGATGGATTGGCAGGCTAG

Protein sequence :
MKKILITVGALIVMVGGVFWFINSRSTAQKDSASTNQTLRVVTTNSILEDMVQNVGGERIKLYSIVKRGTDPHEYEPRPT
DVAATSEADVVFHNGLNLETGGNGWFKKLVKTSHKEFDKDVFAASKGVTAQHLTTNTKEQDPHAWLDLANGIQYVKTITK
VLKQKDAKNAAYYQKNSDRYVAKLQKLHETAQSRFLDIPEKQRVLVTSEGAFKYFSKAYHVTPAYIWEINTESQGTPEQM
QTVLAKIRASEVKHLFVETSVSPKSMNKVAKETGLSIYSKIFTDSLAAKGTQGDTYYTMMKWNLDKIHDGLAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0577 NP_814342.1 adhesion lipoprotein Virulence Not named Protein 5e-79 52
ef0095 AAM75298.1 EF0095 Not tested Not named Protein 4e-79 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRHM_2330 YP_005866822.1 manganese ABC transporter substrate binding component VFG2165 Protein 2e-82 61
LRHM_2330 YP_005866822.1 manganese ABC transporter substrate binding component VFG2157 Protein 2e-73 52
LRHM_2330 YP_005866822.1 manganese ABC transporter substrate binding component VFG1359 Protein 1e-75 50