|
Name : LRHM_1956 (LRHM_1956) Accession : YP_005866448.1 Strain : Lactobacillus rhamnosus GG Genome accession: NC_017482 Putative virulence/resistance : Virulence Product : Clp protease ATP-binding subunit Function : - COG functional category : - COG ID : - EC number : - Position : 2080645 - 2082795 bp Length : 2151 bp Strand : - Note : - DNA sequence : ATGGCAAACTTTAACGATCCGTTTTTCAATCATGACATGGACGATGTATTCAATCAGATGCTTCAAGGAATGGGTAAAGG CGAGTCAGCCCGCTATGTGGTGAATGGCCACGAAATGACGCCGGATGAATTTGCGCAGTATCGGGCGACTGGTCAGCTGC CAAAGCAAGGCGATGAAATCCCGGTTGAAACGACTGGCGAACAAGCGGTTAAGAAAGGCGGTATTCTTGAAAAGCTTGGC CGCAACCTGACGCAAGAAGCCAAGGATGGTCTGCTTGATCCGGTGATTGGCCGTGATCACGAAATTCAGGAAACTGCCGA AATTTTGAGTCGACGGACGAAGAACAATCCAATTTTGGTCGGTGACGCCGGTGTCGGCAAGACCGCGGTGGTTGAAGGCT TGGCACAAGCGATTGTGAAGGGCAATGTACCTGAATCAATTAAAGACAAGCAGATTTGGTCGATTGATCTGTCGAATCTG GAAGCAGGCACGCAATATCGTGGCAGCTTTGAAGAAAAGATTCAGAATCTGATCAAAGAAGTGAAAGCTGCTGGCAATGT GCTTCTGTTCTTTGATGAAATCCATCAAATTCTTGGCGCCGGTGCAACTGGTGGCGAAGAGTCTGGCGGTAAGGGCCTCG CGGATATTATCAAGCCAGCCTTGTCGCGTGGTGAAATCACTGTGATCGGTGCGACGACGCAAGATGAATATCGCAATACC ATTATGAAGGACAGCGCCTTGGCACGTCGGTTTAACGATGTCACAATCAATGAACCGAGCGCTGCCGATACGGTCAAGAT TCTGGAAGGCGTCAAGAAGCTTTACGAACAGCATCATCACGTTCAGTTACCGGAAAATGTTTTGAAGGCGGCGGTGGATT ATAGTATTCAATATATTCCACAGCGCTCCTTGCCGGATAAAGCAATTGACCTCATTGATATGACCGCGGCACACTTAGCA AGCAAGCACCCGATTGTTGACAAGGTGGAACTGGAAAAGCAAATCAAGGATCTCAACGCGCAAAAGGATGCAGCGGCAAA AGCTGAAGATTTTGAAAAAGCTGCCAACCTTAAGAAGGAGATTGCCGACAAGCAACATCAGCTTGAAGGAACGAACAACG AGAAGCCTGTCGTCGCAACCCCGAATGATGTCGCTGCAGCTGTTGAACGTTTGACTGGCATTCCGGTTTCCAAGCTGGGT GCATCCGATATTGAACGGCTGAAAGGCATTGGTAAGCGCCTGAAGGGTAAGGTAATTGGCCAAGACGAAGCCGTTGATAT GGTTGCCCGCGCTATTCGCCGGAACCGGGCTGGCTTTGATGAAGGTAACCGCCCAATTGGCAGCTTCCTGTTTGTTGGAC CAACCGGTGTCGGGAAGACCGAACTGGCTAAGCAGTTGGCGTTAGATCTTTTCGGCAGTAAAGATGCGATCATCCGGTTA GATATGTCCGAATATAGCGATCGTACAGCGGTATCCAAACTGATTGGCACCAGCGCAGGCTATGTTGGATACAATGACAA CAAGAACACGTTGACAGAGCAAGTACGGCGCAATCCTTATTCCATCGTCTTACTCGATGAAATCGAAAAGGCTGATCCAC AAGTCTTGACGCTGTTGCTGCAAGTCTTAGACGATGGGCGGTTAACAGATGGCCAAGGTAATGTCGTTGACTTTAAGAAC ACCGTCATCATTGCCACTTCCAATGCTGGGTTTGGCAATGAAGCATTAACTGGCGAGAAGGAGAAGGACGAAGATTTGAT GAAGCGGTTGGCGCCTTACTTCCGTCCTGAATTCCTGAACCGATTTAACGGGATTGTTGAATTCAGTCACTTAACCAAGA ATGATTTGGGTAAGATCGTTGACTTGATGCTTGAAGACGTCAACAAGACTTTGGCGAAGAAAGGCATCACACTTACCGTG ACGGATGCAGCCAAGGATTGGTTGATTGCCCAAGGTTACGATGAAGCGATGGGTGCACGACCATTACGGCGGGTCATTGA ACGCAACATCCGCGATAAGGTTACCGACTTCTACCTGGATCACCTGAAGGCTAAGAAGTTACAGGCTGACTTGATTGATG GTGCGATTATCGTCAGTGAAGTGCAACCAGCAAGCGACAAGCCAAAGAAAGAAGCTAGCGGTGCGAAGTAA Protein sequence : MANFNDPFFNHDMDDVFNQMLQGMGKGESARYVVNGHEMTPDEFAQYRATGQLPKQGDEIPVETTGEQAVKKGGILEKLG RNLTQEAKDGLLDPVIGRDHEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQAIVKGNVPESIKDKQIWSIDLSNL EAGTQYRGSFEEKIQNLIKEVKAAGNVLLFFDEIHQILGAGATGGEESGGKGLADIIKPALSRGEITVIGATTQDEYRNT IMKDSALARRFNDVTINEPSAADTVKILEGVKKLYEQHHHVQLPENVLKAAVDYSIQYIPQRSLPDKAIDLIDMTAAHLA SKHPIVDKVELEKQIKDLNAQKDAAAKAEDFEKAANLKKEIADKQHQLEGTNNEKPVVATPNDVAAAVERLTGIPVSKLG ASDIERLKGIGKRLKGKVIGQDEAVDMVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKDAIIRL DMSEYSDRTAVSKLIGTSAGYVGYNDNKNTLTEQVRRNPYSIVLLDEIEKADPQVLTLLLQVLDDGRLTDGQGNVVDFKN TVIIATSNAGFGNEALTGEKEKDEDLMKRLAPYFRPEFLNRFNGIVEFSHLTKNDLGKIVDLMLEDVNKTLAKKGITLTV TDAAKDWLIAQGYDEAMGARPLRRVIERNIRDKVTDFYLDHLKAKKLQADLIDGAIIVSEVQPASDKPKKEASGAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 9e-116 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LRHM_1956 | YP_005866448.1 | Clp protease ATP-binding subunit | VFG0080 | Protein | 1e-125 | 50 |
| LRHM_1956 | YP_005866448.1 | Clp protease ATP-binding subunit | VFG0079 | Protein | 5e-115 | 46 |
