Gene Information

Name : LRHM_1371 (LRHM_1371)
Accession : YP_005865863.1
Strain : Lactobacillus rhamnosus GG
Genome accession: NC_017482
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATP-binding component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1431650 - 1432420 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAACATTATTAAAGTTAAAAAATGTCGAAAAGACTTATACCAGTCGCGGTGCCCAACCGGTACAGGCACTCGTGAA
CATCAGTTTTTCCGTTGAATCAGGAGAATTTGTCGCGATTATGGGGGAATCCGGTTCAGGCAAAAGTACCTTACTGAACT
TAATCGCCACGCTTGATGATCCTACCGGTGGCGAAATCAGCCTTAAAGGACAGGACCTGCGCAAAGTCAAAGAAGGCGCA
CGGGCTAAATTTCGGCGGGAACATCTCGGGTTTATTTTTCAGGATTTTGACTTGCTTGACACCTTTAACGTTCAGGACAA
CATTTTCCTGCCATTAGTTTTAGCCAAGAAGCCGCTTGAAATCATGAAAAATCGGCTCACCCAACTGGCGCCGCGTCTAG
GTATCACCGATTTACTGAAAAAATACCCATATGAACTTTCCGGTGGCCAACAACAACGTGTAGCCGCTGCTCGGGCAATG
ATCACCGAGCCGGAAATCCTATTGGCAGACGAACCCACCGGCGCACTTGATTCTAGAACCTCCAGTGAGCTGTTGGACCT
GCTAACCGATGTCAATGCCGAAAGTAAGCAGACAATCCTCATGGTGACGCACAGTGCGGTTGCGGCCAGTCATAGCCAGC
GTGTTTTGTTTATTCGCGATGGTCAGATTTTCCATCAGCTGTATCGCGGTGAATTACAGCAGCCCGAATTTTTGACCCGA
ATCAGCGAAACCATGACCGCAATGCTGACGAAGGAAGGCGAGGCGCAATGA

Protein sequence : 
MSTLLKLKNVEKTYTSRGAQPVQALVNISFSVESGEFVAIMGESGSGKSTLLNLIATLDDPTGGEISLKGQDLRKVKEGA
RAKFRREHLGFIFQDFDLLDTFNVQDNIFLPLVLAKKPLEIMKNRLTQLAPRLGITDLLKKYPYELSGGQQQRVAAARAM
ITEPEILLADEPTGALDSRTSSELLDLLTDVNAESKQTILMVTHSAVAASHSQRVLFIRDGQIFHQLYRGELQQPEFLTR
ISETMTAMLTKEGEAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRHM_1371 YP_005865863.1 antimicrobial peptide ABC transporter ATP-binding component CP001581.1.gene798.p Protein 2e-36 48
LRHM_1371 YP_005865863.1 antimicrobial peptide ABC transporter ATP-binding component NC_012469.1.7686878. Protein 5e-34 47
LRHM_1371 YP_005865863.1 antimicrobial peptide ABC transporter ATP-binding component CP001581.1.gene598.p Protein 6e-34 43
LRHM_1371 YP_005865863.1 antimicrobial peptide ABC transporter ATP-binding component NC_008702.1.4606598. Protein 3e-28 42