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Name : LJP_0296 (LJP_0296) Accession : YP_005861582.1 Strain : Lactobacillus johnsonii DPC 6026 Genome accession: NC_017477 Putative virulence/resistance : Virulence Product : ATP-dependent clp protease ATP-binding subunit clpA-like protein Function : - COG functional category : - COG ID : - EC number : - Position : 336461 - 338929 bp Length : 2469 bp Strand : + Note : - DNA sequence : ATGGAAAAATCATATAGTGATAGTGCAAAAAATGTTCTTGAAATTGCTAAAGAGCAAGCACAAAACTTTCACCATCGAAT TATTGGAACAGAGCATGTTCTGCTTGCTTTAGTAATTGAAGCTAATGGGGATGCTGGAAAACTTTTGCGTGAAAGAAATG TAACACCAACCTTAGTGCGAGAAGAAATTGAAAGATATACTGGCTATGGTTCAAGTCCAAAGGCCACATATATGGAAATG TCCCCACGCTTAAGTTTAGTTTTGAATTTTGCTAAACAAAAGGCTGACGAATTAGGGACTGCTCAAATTGAGACAAAACA TATTTTGCTAGGTTTGTTAGCTAGTGATCAAATTTTAGCAAGTTTAATTTTGAAAAATATTGGTGTAGATCCACGAGATT TAAGTCAGGATGTAAATGATAGTTTCATGGATGGTTCTGGGGAAGAAAATAATGTTCTTGGTATTTCTTCAGCCACTGGT ATGAAAAAAGGTAAGTCATTGACTCCAAATTTAGATAAAGTTAGTGTGAATCTAAATAAAAGAGCCCGTGAAGGTGCAAT TGACCCGGTAATTGGTAGAGATAAAGAAATAAAAAGAGTAATTCAAATCTTATCTCGAAGAACCAAAAACAATCCCGTTT TGGTAGGAGAACCTGGTGTTGGTAAGACTGCAGTTGCCCAAGGAATAGCAGCCGCAATTGTAAATCATGAAGTTCCAGAT ACTCTAGCTAAAAAACGAGTTATGGCCTTGGACATGGGAAGTTTAATTGCTGGAACTAAATATCGTGGTGAATTTGAAGA TAGAATGAAGAAGATTCTAAAAGAAATTCAACAGGATGGTTCAGTTATCTTATTTGTTGATGAAATGCATACTTTGATTG GTGCAGGTGGCGCGGAAGGTGCAATTGATGCTTCAAATATCTTAAAGCCTTCATTAGCACGTGGCGATATTCAAATGATT GGTGCTACGACTTTTGATGAGTACCAAAAATATATTGAAAAAGATCAAGCTTTAGCAAGACGTTTTCAACAAGTAAAAAT TGGTGAACCTTCAAAAGAAGAAACTGTGGATATTTTAAAAGGCTTGCGCCCTAAATATGAAAAATTCCACAATGTAAAAA TTGAAGATGAGGCAATTAATGATGCAGTTGAATTTTCAACACGTTATATTGCTAACCGATTCTTACCTGATAAAGCAATT GATTTGATTGATGAAGCAAGTGCAGCTGTAAAAATTCAAGCAATCGGTAAAAGTGATCCTCGTCTAACTAAATTGGATAC ACAAATTAATGATGTTATTCATCAGAAAGAACAAGCTGCAGAAAATCAAAATTTTTTTCAAGCAGCTAAGTTACGGGATG AGGAAAATAAGCTTACACAGGATCGGGATAAATTAATCGAAAAAGTAGAGAATAAAAACTCTAAAAAGTCGATTGTTGAT TCTGATAAGATCGCTCAAATTGTATCTGAATGGACTGGTGTGCCCGTTACTAGAATGAAGAAGAGTGAAACTAAACGTTT AGCTCATTTAGAAAGTATTTTGCATGAACGTGTAATTGGACAGGACGAAGCTATCAGTGCCGTAAGTCGAGCAATTAGAC GAAGTAGAAGTGGAATTAAGGATGAAAATCGTCCAATCGGTTCGTTCTTATTCCTAGGACCTACTGGTGTTGGTAAGACA GAATTAGCTAAGGCTCTTGCTGCAGCAGTCTTTGGCTCAGAACGAAATATTATTCGTGTAGACATGTCTGAATACATGGA TCAGATTGCAACAAGCAAATTAATTGGTTCGGCACCAGGATATGTAGGATATGAAGAGGGTGGTCAGCTCTCAGAACGTG TAAGACGTAATCCATATTCAGTAATTTTATTGGATGAAGTAGAAAAAGCTCATCCGGATGTGTTTAATTTATTGCTTCAA GTTTTGGATGAAGGATTTTTAACTGACTCTAAAGGTAGAAAAGTCGATTTTAGAAATACCATTATTATCATGACTTCTAA CCTTGGGTCACGTGGTTTGCAAGAAGATAAGACAGTTGGGTTTGCAGCGGATAATGCTGATAAAAATAAACTTCAACAAG AAAAAGTTACGGCGGCTGTTAAACAATTCTTCAGACCAGAATTTTTAAACAGAATTGATGAGACCGTGGTCTTTGATAGC TTAACTAAGAAACAATTGCGTGAAATTGTTAGCTTAATGACTGGTCATTTGGTAGATCGCTTAGCTAAAAAAGACGTAAC CTTAAAGATTTCACCAGCGGCTTTAGATGTATTGGCTAAAGATGGATTTGATCCAGAGATGGGCGCTCGTCCATTACGTC GTGCAATTCAACATGAACTTGAAGATGTAATTGCTGAAGATTTAATTAGTGAAAAAATTAAGGCTGACCAAATTGTAAAA GTTGGAGCTCATCAAGGTAAATTAAAATTTACAATTGTTGATAAAGATAATACTTTAGTTAAAAATTAG Protein sequence : MEKSYSDSAKNVLEIAKEQAQNFHHRIIGTEHVLLALVIEANGDAGKLLRERNVTPTLVREEIERYTGYGSSPKATYMEM SPRLSLVLNFAKQKADELGTAQIETKHILLGLLASDQILASLILKNIGVDPRDLSQDVNDSFMDGSGEENNVLGISSATG MKKGKSLTPNLDKVSVNLNKRAREGAIDPVIGRDKEIKRVIQILSRRTKNNPVLVGEPGVGKTAVAQGIAAAIVNHEVPD TLAKKRVMALDMGSLIAGTKYRGEFEDRMKKILKEIQQDGSVILFVDEMHTLIGAGGAEGAIDASNILKPSLARGDIQMI GATTFDEYQKYIEKDQALARRFQQVKIGEPSKEETVDILKGLRPKYEKFHNVKIEDEAINDAVEFSTRYIANRFLPDKAI DLIDEASAAVKIQAIGKSDPRLTKLDTQINDVIHQKEQAAENQNFFQAAKLRDEENKLTQDRDKLIEKVENKNSKKSIVD SDKIAQIVSEWTGVPVTRMKKSETKRLAHLESILHERVIGQDEAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKT ELAKALAAAVFGSERNIIRVDMSEYMDQIATSKLIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEVEKAHPDVFNLLLQ VLDEGFLTDSKGRKVDFRNTIIIMTSNLGSRGLQEDKTVGFAADNADKNKLQQEKVTAAVKQFFRPEFLNRIDETVVFDS LTKKQLREIVSLMTGHLVDRLAKKDVTLKISPAALDVLAKDGFDPEMGARPLRRAIQHELEDVIAEDLISEKIKADQIVK VGAHQGKLKFTIVDKDNTLVKN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-172 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LJP_0296 | YP_005861582.1 | ATP-dependent clp protease ATP-binding subunit clpA-like protein | VFG0079 | Protein | 0.0 | 53 |
| LJP_0296 | YP_005861582.1 | ATP-dependent clp protease ATP-binding subunit clpA-like protein | VFG0080 | Protein | 7e-145 | 50 |
