Gene Information

Name : LCBD_1875 (LCBD_1875)
Accession : YP_005859912.1
Strain : Lactobacillus casei BD-II
Genome accession: NC_017474
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator YycF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1831794 - 1832480 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTAAAATATTAATTATTGAAGATGAAAAAAATTTAGCGCGGTTTGTCGAACTGGAATTAAAACACGAGGGCTATGA
GACCGAAGTGCATTTTAACGGTCGAACCGGGTTGGAAGCGGCTTTGGCAGAGGACTGGGATGCCATCTTGCTTGACTTGA
TGTTGCCAGAATTAAACGGCCTTGAAGTTTGCCGGCGCGTTCGTCAGGTGAAGAATACACCGATCATTATGATGACCGCG
CGGGATTCTGTCATTGATCGCGTCAGTGGCTTGGATCATGGCGCTGATGACTACATTGTGAAGCCATTTGCCATTGAAGA
ATTACTCGCGCGCTTGCGTGCTTTGTTGCGCCGAATCAGTATTGAAGGCGAAAACAACACCGCTAAGCAGACAACCATCA
AATATCGTGATTTAGTGATTGAAAAAGAAAATCGCGTTGTTCGGCGCGGCGACGACATTATTGAATTAACCAAACGTGAG
TACGAATTATTGCTGACGCTTATGGAAAATGTCAACGTTGTTTTGGCTCGTGACGTTTTGCTCTCAAAGGTTTGGGGTTA
CAACTCTGACGTGGAAACGAATGTTGTTGACGTCTATGTCCGTTATATTCGTAATAAAATCGATCGACCGGGTGAGCCGA
GTTATATTCAAACGGTTCGGGGAACCGGCTATGTTATGCGTTCGTAA

Protein sequence : 
MSKILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNGLEVCRRVRQVKNTPIIMMTA
RDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISIEGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKRE
YELLLTLMENVNVVLARDVLLSKVWGYNSDVETNVVDVYVRYIRNKIDRPGEPSYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-27 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-27 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF HE999704.1.gene1528. Protein 2e-79 78
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_010079.5776364.p0 Protein 2e-47 53
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_002952.2859858.p0 Protein 2e-47 53
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_007622.3794948.p0 Protein 2e-47 53
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_003923.1003417.p0 Protein 2e-47 53
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_013450.8614146.p0 Protein 2e-47 53
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_002951.3238224.p0 Protein 2e-47 53
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_007793.3914065.p0 Protein 2e-47 53
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_002758.1121390.p0 Protein 2e-47 53
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF AE015929.1.gene1106. Protein 2e-43 52
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_012469.1.7685629. Protein 2e-38 44
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF BAC0308 Protein 9e-31 43
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF BAC0125 Protein 3e-29 43
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF BAC0197 Protein 3e-28 42
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF BAC0638 Protein 2e-25 42
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF HE999704.1.gene2815. Protein 3e-32 42
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF BAC0083 Protein 4e-28 41
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF BAC0111 Protein 3e-27 41
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF NC_012469.1.7686381. Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF VFG1390 Protein 5e-37 44
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF VFG0596 Protein 4e-28 43
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF VFG1389 Protein 1e-31 42
LCBD_1875 YP_005859912.1 DNA-binding response regulator YycF VFG1702 Protein 8e-30 41