Gene Information

Name : LCBD_1620 (LCBD_1620)
Accession : YP_005859658.1
Strain : Lactobacillus casei BD-II
Genome accession: NC_017474
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1572891 - 1573661 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAACATTACTTAAATTAAAAAATATCGAAAAAACTTATACCAGTCGCGGGGCTCAGCCGGTGCGTGCCTTGACGAA
CATCAGTTTCACTGTTGAAGCCGGTGAATTTGTGGCAATTATGGGTGAATCAGGTTCTGGCAAAAGCACCTTGCTAAATC
TGATTGCAACGCTGGACGATCCAACCGGCGGCGATATTAGTCTAAACGGACAGGATCTGAGCAACGTCAAGGAAGGTGCC
CGGGCTAAGTTTCGTCGAGAACACCTCGGTTTCATCTTTCAGGATTTCGACTTGCTTGACACCTTCAATGTTCAAGACAA
CATCTTTCTCCCATTAGTCCTTGCCAAGAAGCCTCTCGAAATTATGAGAAATCGGCTAACTAAGCTCGCACCACGACTAG
GCATTGATGCCTTGCTGAAAAAATATCCTTACGAGCTTTCCGGCGGCCAGCAACAGCGCGTGGCGGCAGCACGCGCGATG
ATCACCGAGCCAGAAATTTTGTTGGCTGATGAACCCACCGGCGCCTTGGATTCTAAAACTTCTACAGAACTGCTTGATCT
GCTCACAGATGTGAATGCCGAAAACCGGCAAACGATCCTCATGGTAACGCACAGTGCTGTGGCGGCCAGTCACAGCCGAC
GAGTATTATTTATTCGCGACGGTCAAATTTTTCATCAACTTTATCGTGGGGATCTCGATCAACCAGCCTTTCTAACCCGT
ATCAGCGAGACGATGACCGCCATGCTGACAAAGGCAGGCGATGGACAATGA

Protein sequence : 
MSTLLKLKNIEKTYTSRGAQPVRALTNISFTVEAGEFVAIMGESGSGKSTLLNLIATLDDPTGGDISLNGQDLSNVKEGA
RAKFRREHLGFIFQDFDLLDTFNVQDNIFLPLVLAKKPLEIMRNRLTKLAPRLGIDALLKKYPYELSGGQQQRVAAARAM
ITEPEILLADEPTGALDSKTSTELLDLLTDVNAENRQTILMVTHSAVAASHSRRVLFIRDGQIFHQLYRGDLDQPAFLTR
ISETMTAMLTKAGDGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCBD_1620 YP_005859658.1 hypothetical protein NC_012469.1.7686878. Protein 1e-34 47
LCBD_1620 YP_005859658.1 hypothetical protein CP001581.1.gene798.p Protein 6e-36 47
LCBD_1620 YP_005859658.1 hypothetical protein CP001581.1.gene598.p Protein 8e-35 44
LCBD_1620 YP_005859658.1 hypothetical protein NC_008702.1.4606598. Protein 4e-30 43