Gene Information

Name : LCBD_0146 (LCBD_0146)
Accession : YP_005858187.1
Strain : Lactobacillus casei BD-II
Genome accession: NC_017474
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 143604 - 144602 bp
Length : 999 bp
Strand : -
Note : -

DNA sequence :
ATGAGTCCATATACACATCTTACCTTAAAAGACCGCGAATGCATACTGTTAGGTGTAACTTTACACCATACTTACCAGGT
TATTGCCGATCAAATCGGTTGTTCCAAAGCCACTGTGTCACGAGAAATTAAACGCAACGGCGGTCGGGGTGCCTATTCTG
CCGTAAAAGCCCAGCAGAACTATCAACAGCGCCGATTAAAGAGTCGTCGCCTCAGGGTACTGGAGAATTTAAAGCTACGC
GACTTTGTCCTTCACTGCATTCTTCAACGGCAATGGTCACCCGAGCAAATCGCCGGTCGTTTATCTTTAGAGAACAGTAA
TTGGCATATCAGCTACAACACGATTTATCGCGGAATTGAACGAAATAATTTAGGCGTTAAACGTAAAAGTCATGGGGCTC
GAGGATTCGCTCGAAAGTTACGACATCGTGGGAAAACTCGTAAGGTTAAAGGAACTGTCAACGAACGACGTGGCCGTTTT
AATAATGTCCCATCAGTCCATGAACGACCAGTCTCATGTGAGAATCGGACTCGTTTTGGCCATTGGGAAGGCGATACCGT
TCGCGGCAAGATCGGGCGTTCGGGTTTAGTGTCACTGGTCGACCGTAAGTCACGATACCTTCTGTCTGAGCGTGTACCCA
AAGTGAATGCCAAGAATGTGACCCAAGCGATGATCGACCTCCTGCATACAGTCACACCTAAACGCGTTCGTACGCTTACA
CCAGACCGAGGTACAGAGTTTGCGGGTTATCGTGAAGTCGGTAAAGAGCTTGGTATCTCAGTCTATTTTCCAGACCCGTA
CGCACCACAACAACGTGGGACCAACGAAAATACCAATGGTCTCATCCGAGAGTATTTTCCCAAAGGAACTGACCTTGATG
AACTGACCGATCAAGATATCGCGAAGTTTGTCAGGGATTTAAATAATCGACCCCGTAAGGTCTTAGTCTGGAAGACACCG
TCTGAAGTTTTCTTCGGTAAAAAGTTACACTTGATTTGA

Protein sequence :
MSPYTHLTLKDRECILLGVTLHHTYQVIADQIGCSKATVSREIKRNGGRGAYSAVKAQQNYQQRRLKSRRLRVLENLKLR
DFVLHCILQRQWSPEQIAGRLSLENSNWHISYNTIYRGIERNNLGVKRKSHGARGFARKLRHRGKTRKVKGTVNERRGRF
NNVPSVHERPVSCENRTRFGHWEGDTVRGKIGRSGLVSLVDRKSRYLLSERVPKVNAKNVTQAMIDLLHTVTPKRVRTLT
PDRGTEFAGYREVGKELGISVYFPDPYAPQQRGTNENTNGLIREYFPKGTDLDELTDQDIAKFVRDLNNRPRKVLVWKTP
SEVFFGKKLHLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Pmu_02710 YP_005176177.1 ISApl1 transposase Not tested ICEPmu1 Protein 2e-60 48
unnamed CAC39292.1 - Not tested LPA Protein 6e-35 42