Gene Information

Name : LC2W_0656 (LC2W_0656)
Accession : YP_005855574.1
Strain : Lactobacillus casei LC2W
Genome accession: NC_017473
Putative virulence/resistance : Unknown
Product : Integrase, catalytic region
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 636795 - 637418 bp
Length : 624 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGGAACTGGATATCCACTCCGTTACCGTCAATAAGTGGAAAGCGGCTTCGGCTTCCAAAACCAAGGTTGAACAGCG
TCCCAACTTGCTTAAGCAGGATTTCTCGACCACTGGTTTAAATCAAAAATGGACCGCTGATATGACCTATATTCAAACGA
AGCGTAATGGCTGGTGTTACTTATCAACCATCATGGACCTGCACTCACGACGGATTATCGGCTATTCGTTCTCAAAAAAG
ATGGATACTGATTTAGTCTTAAAGACCCTTGAAAGCGCGGTTAAAAATCGAACCATTACTGGGGACCTGATTATCCATAC
GGATTTAGGATCACAGTATACCAGCGATGATTACAATCAACGTTTAACTGAGCTACATATCCGCCACTCATACAGCCGTA
AGGGTTGTCCGTATGATAATGCGCCAATGGAATCCTTTCACGCTTCCCTCAAAAAGGAATGTGTTTATCCAGTGCCGGTC
TTTGAAGATTATGAAACTGCCGCTGCCGTCCTTTTTGAATATGTGCATGCTTTCTACAATAGGAAGAGAATTCATAGTTC
ACTGGGCTACCAGACCCCCTTACAACTTGAAATTGCAACACTTACGAGCCAAATGGCCGCCTGA

Protein sequence : 
MKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKK
MDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPV
FEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQLEIATLTSQMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 5e-21 41
unnamed AAC31485.1 L0006 Not tested LEE Protein 3e-21 41
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-26 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-26 41
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 8e-27 41
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 5e-27 41
Z5089 NP_290241.1 transposase Not tested LEE Protein 4e-21 41
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 3e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LC2W_0656 YP_005855574.1 Integrase, catalytic region VFG1706 Protein 2e-27 41
LC2W_0656 YP_005855574.1 Integrase, catalytic region VFG0785 Protein 1e-21 41