Gene Information

Name : LC2W_3116 (LC2W_3116)
Accession : YP_005858025.1
Strain : Lactobacillus casei LC2W
Genome accession: NC_017473
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3019015 - 3019704 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence :
ATGATTGATTTACGGCATGTCAACAAAAGCTATCTGCAAGGCGACACAGCCTTCCCAGTGCTTAAAGATATCAACTTACA
CATTGATGAAGGCGAGTTCGTCGCAATTATGGGCCCGTCTGGCTCTGGCAAAACCACATTAATCAATATTATTGGCTTCC
TTGATACAGCTTTTGAGGGCGACTACCTTTTTCAAAACGAAAATGTCGCCGCCTTTAATCGCGCCACTGCGTCAAAAATG
CGAAATCAGCATGTCGGCTTTGTCTTTCAAAATTTCAGCCTAATCAATAACTTAAACATTTTTGAAAATGTTCTTATTCC
TCTGAGTTATGGTGGCAATCGACGAAGTGATGTTAAAGACAAAATCACTGAGTTGCTGCATTCTGTTGGCCTAGTCGATG
TTGAAACGAAATTACCGCGCAATTTATCTGGCGGCCAGCAGCAGCGGGTGGCAATCGCTCGTGCCCTTGCAAATTCGCCG
CAATTCTTAATTGCCGATGAACCGACCGGCGCCTTAGACAGCCATACTTCGGCAGAGATCATGCGACTCTTTAAAACACT
CCATCAACAAGGCGTGACCATCATTATGGTGACGCATGATGAACACGTGGCGCTACAAAGTGATCGCATGATTAAAGTAT
TAGACGGGCAGATCATCAGTGACACGGAGGTTAGCCATGCGAATAACTGA

Protein sequence :
MIDLRHVNKSYLQGDTAFPVLKDINLHIDEGEFVAIMGPSGSGKTTLINIIGFLDTAFEGDYLFQNENVAAFNRATASKM
RNQHVGFVFQNFSLINNLNIFENVLIPLSYGGNRRSDVKDKITELLHSVGLVDVETKLPRNLSGGQQQRVAIARALANSP
QFLIADEPTGALDSHTSAEIMRLFKTLHQQGVTIIMVTHDEHVALQSDRMIKVLDGQIISDTEVSHANN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-34 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-36 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LC2W_3116 YP_005858025.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-49 50
LC2W_3116 YP_005858025.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-34 41