Gene Information

Name : LC2W_2583 (LC2W_2583)
Accession : YP_005857498.1
Strain : Lactobacillus casei LC2W
Genome accession: NC_017473
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2510299 - 2511240 bp
Length : 942 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAAGATTCTAATCAGTGTTGTTGCTGTTTTAACCATGGTTGCAGGGGTTTTCTGGTTTGTAAACAACCGCAGTAC
GACTCAGAAAGATTCAGCAAGTACTAACCAACAATTACGTGTCGTCACCACCAACTCGATTCTTGAAGACATGGTGCACA
ATGTCGGCGGTGATCGCATTGAACTCTATAGTATCGTCAAGCGCGGCACCGACCCGCACGAATATGAACCGCGACCGACC
GACGTTGCTGCCACTAGTGAAGCCGATGTTGTCTTCCACAATGGCCTCAACCTTGAAACTGGCGGAAATGGTTGGTTCAA
AAAGTTAGTTCAAACATCGCATAAAGCTTTTAACAAAGACGTTTTTGCTGCCAGTGACGGGGTTAATCCGATGTACCTGA
CGACCAATACGAAGGAACAAGACCCGCACGCTTGGCTTGATCTGGCTAACGGGATTCAATACGTGAAAACCATCACCAAG
GTGTTGAAGCAAAAAGATGCCAAGAATGCCAATTATTACCAGATGAATGCAGATCAATACGTTGCTAAGCTGCAAAAACT
GCATCAAACCGCCCAATCTCAGTTCCTTGATATTCCGGAACGCCAGCGGTTGCTCGTTACATCAGAAGGCGCCTTCAAGT
ATTTCTCTAAGGCTTATCACGTCACACCGGCCTATATCTGGGAAATTAACACCGAAGCCCAAGGTACGCCTGAGCAGATG
CAGACGGTTTTAGCAAAAATTCGCGCCTCCGATGTTAAGCATTTGTTTGTCGAAAGTTCTGTTTCACCGAAGTCCATGAA
CAAAGTTGCTAAAGAAACCGGCTTATCGATTCACGCCAAAATCTTTACTGACTCTTTGGCAGCAAAAGGCACCAAAGGCG
ATACGTACTACAGCATGATGAAATGGAACCTAGATAAGATTCACGACGGTTTGGCGGAATAA

Protein sequence : 
MKKILISVVAVLTMVAGVFWFVNNRSTTQKDSASTNQQLRVVTTNSILEDMVHNVGGDRIELYSIVKRGTDPHEYEPRPT
DVAATSEADVVFHNGLNLETGGNGWFKKLVQTSHKAFNKDVFAASDGVNPMYLTTNTKEQDPHAWLDLANGIQYVKTITK
VLKQKDAKNANYYQMNADQYVAKLQKLHQTAQSQFLDIPERQRLLVTSEGAFKYFSKAYHVTPAYIWEINTEAQGTPEQM
QTVLAKIRASDVKHLFVESSVSPKSMNKVAKETGLSIHAKIFTDSLAAKGTKGDTYYSMMKWNLDKIHDGLAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0095 AAM75298.1 EF0095 Not tested Not named Protein 9e-80 53
EF0577 NP_814342.1 adhesion lipoprotein Virulence Not named Protein 1e-79 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LC2W_2583 YP_005857498.1 ABC transporter VFG2165 Protein 1e-81 61
LC2W_2583 YP_005857498.1 ABC transporter VFG1359 Protein 6e-78 54
LC2W_2583 YP_005857498.1 ABC transporter VFG2157 Protein 4e-73 52