Gene Information

Name : LC2W_1588 (LC2W_1588)
Accession : YP_005856505.1
Strain : Lactobacillus casei LC2W
Genome accession: NC_017473
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1542004 - 1542774 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAACATTACTTAAATTAAAAAATATCGAAAAAACTTATACCAGTCGCGGGGCTCAGCCGGTGCGTGCCTTGACGAA
CATCAGTTTCACTGTTGAAGCCGGTGAATTTGTGGCAATTATGGGTGAATCAGGTTCTGGCAAAAGCACCTTGCTAAATC
TGATTGCAACGCTGGACGATCCAACCGGCGGCGATATTAGTCTAAACGGACAGGATCTGAGCAACGTCAAGGAAGGTGCC
CGGGCTAAGTTTCGTCGAGAACACCTCGGTTTCATCTTTCAGGATTTCGACTTGCTTGACACCTTCAATGTTCAAGACAA
CATCTTTCTCCCATTAGTCCTTGCCAAGAAGCCTCTCGAAATTATGAGAAATCGGCTAACTAAGCTCGCACCACGACTAG
GCATTGATGCCTTGCTGAAAAAATATCCTTACGAGCTTTCCGGCGGCCAGCAACAGCGCGTGGCGGCAGCACGCGCGATG
ATCACCGAGCCAGAAATTTTGTTGGCTGATGAACCCACCGGCGCCTTGGATTCTAAAACTTCTACAGAACTGCTTGATCT
GCTCACAGATGTGAATGCCGAAAACCGGCAAACGATCCTCATGGTAACGCACAGTGCTGTGGCGGCCAGTCACAGCCGAC
GAGTATTATTTATTCGCGACGGTCAAATTTTTCATCAACTTTATCGTGGGGATCTCGATCAACCAGCCTTTCTAACCCGT
ATCAGCGAGACGATGACCGCCATGCTGACAAAGGCAGGCGATGGACAATGA

Protein sequence : 
MSTLLKLKNIEKTYTSRGAQPVRALTNISFTVEAGEFVAIMGESGSGKSTLLNLIATLDDPTGGDISLNGQDLSNVKEGA
RAKFRREHLGFIFQDFDLLDTFNVQDNIFLPLVLAKKPLEIMRNRLTKLAPRLGIDALLKKYPYELSGGQQQRVAAARAM
ITEPEILLADEPTGALDSKTSTELLDLLTDVNAENRQTILMVTHSAVAASHSRRVLFIRDGQIFHQLYRGDLDQPAFLTR
ISETMTAMLTKAGDGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-28 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LC2W_1588 YP_005856505.1 hypothetical protein NC_012469.1.7686878. Protein 1e-34 47
LC2W_1588 YP_005856505.1 hypothetical protein CP001581.1.gene798.p Protein 6e-36 47
LC2W_1588 YP_005856505.1 hypothetical protein CP001581.1.gene598.p Protein 8e-35 44
LC2W_1588 YP_005856505.1 hypothetical protein NC_008702.1.4606598. Protein 4e-30 43