Gene Information

Name : LC2W_1140 (LC2W_1140)
Accession : YP_005856058.1
Strain : Lactobacillus casei LC2W
Genome accession: NC_017473
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1109427 - 1109615 bp
Length : 189 bp
Strand : +
Note : -

DNA sequence :
ATGGAAAATAATATCTATGCACTCAGAACGCACCAACAATTGACTCAACAGGAACTGGCTGATGCGGTGAATGTAACCCG
CCAAACGATTAATGCCATCGAGAATAATAAATACGATCCAACGCTTTCTTTAGCTTTCGCACTTGCAGAACGCTTAGAGA
CGACTGTGGATCAACTGTTTCAACATTAG

Protein sequence :
MENNIYALRTHQQLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAERLETTVDQLFQH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 4e-11 57
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 3e-07 46
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 2e-07 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LC2W_1140 YP_005856058.1 transcriptional regulator VFG2175 Protein 8e-08 46
LC2W_1140 YP_005856058.1 transcriptional regulator VFG2168 Protein 8e-08 46